Chemistry Reference
In-Depth Information
102.
Wang , Y. ; Patel , D.J. ; Solution structure of the
Tetrahymena
telomeric repeat d(T
2
G
4
)
4
G - tetraplex ;
Structure
, 1994 ,
2
, 1141 - 1156 .
Kettani , A. ; Gorin , A. ; Majumdar , A. ; Hermann , T. ; Skripkin , E. ; Zhao , H. ,
et al.
; A
dimeric DNA interface stabilized by stacked A.(G.G.G.G).A hexads and coordinated
monovalent cations;
J. Mol. Biol.
, 2000 ,
297
, 627 - 644 .
Parkinson , G.N. ; Lee , M.P.H. ; Neidle , S.; Crystal structure of parallel quadruplexes from
human telomeric DNA;
Nature
2002 ,
417
, 876 - 880 .
Risitano , A. ; Fox, K.R.; The stability of intramolecular DNA quadruplexes with extended
loops forming inter - and intra - loop duplexes ;
Org. Biomol. Chem.
2003 ,
1
, 1852 - 1855 .
Hazel , P. ; Huppert , J. ; Balasubramanian , S. ; Neidle , S. ; Loop - length - dependent folding
of G - quadruplexes ;
J. Am. Chem. Soc.
, 2004 ,
126
, 16405 - 16415 .
Risitano , A. ; Fox , K.R. ; Infl uence of loop size on the stability of intramolecular DNA
quadruplexes ;
Nucleic Acids Res.
, 2004 ,
32
, 2598 - 2606 .
Rachwal , P.A. ; Findlow , I.S. ; Werner , J.M. ; Brown , T. ; Fox , K.R. ; Intramolecular DNA
quadruplexes with different arrangements of short and long loops;
Nucleic Acids Res.
2007 ,
35
, 4214 - 4222 .
Rachwal , P.A. ; Brown , T. ; Fox , K.R.; Sequence effects of single base loops in intramo-
lecular quadruplex DNA;
FEBS Lett.
, 2007 ,
581
, 1657 - 1660 .
Rachwal , P.A. ; Brown , T. ; Fox , K.R. ; Effect of G -tract length on the topology and stability
of intramolecular DNA quadruplexes;
Biochemistry
, 2007 ,
46
, 3036 - 3044 .
Cevec , M. ; Plavec , J.
103.
104.
105.
106.
107.
108.
109.
110.
111.
; Role of loop residues and cations on the formation and stability
of dimeric DNA G- quadruplexes ;
Biochemistry
, 2005 ,
44
, 15238 - 15246 .
Hazel , P. ; Parkinson , G.N. ; Neidle , S. ; Predictive modelling of topology and loop
variations in dimeric DNA quadruplex structures;
Nucleic Acids Res.
,
112.
2006 ,
34
,
2117 - 2127 .
Smirnov , I. ; Shafer , R.H. ; Effect of loop sequence and size on DNA aptamer stability ;
Biochemistry
, 2000 ,
39
, 1462 - 1468 .
Olsen , C.M. ; Gmeiner , W.H. ; Marky , L.A. ; Unfolding of G -quadruplexes: Energetic, and
ion and water contributions of G- quartet stacking ;
J. Phys. Chem. B
, 2006 ,
110
,
6962 - 6969 .
Pinnavaia , T.J. ; Marshall , C.L. ; Mettler , C.M. ; Fisk , C.I. ; Miles , H.T. ; Becker , E.D. ; Alkali -
metal ion specifi city in solution ordering of a nucleotide, 5′ - guanosine monophosphate ;
J. Am. Chem. Soc.
, 1978 ,
100
, 3625 - 3627 .
Borzo , M. ; Detellier , C. ; Laszlo , P. ; Paris , A. ; H - 1, Na - 23, and P - 31 NMR - Studies of the
Self - Assembly of the 5 ′-guanosine monophosphate dianion in neutral aqueous- solution
in the presence of sodium- cations ;
J. Am. Chem. Soc.
, 1980 ,
102
, 1124 - 1134 .
Detellier , C. ; Laszlo , P. ; Role of alkali -metal and ammonium cations in the self- assembly
of the 5′ - guanosine monophosphate dianion ;
J. Am. Chem. Soc.
, 1980 ,
102
, 1135 -
1141 .
Sen , D. ; Gilbert , W. ; The structure of telomeric DNA: DNA quadruplex formation ;
Curr.
Opin. Struct. Biol.
, 1991 ,
1
, 435 - 438 .
Federiconi , F. ; Ausili , P. ; Fragneto , G. ; Ferrero , C. ; Mariani , P. ; Locating counterions in
guanosine quadruplexes: A contrast-variation neutron diffraction experiment in con-
densed hexagonal phase;
J. Phys. Chem. B
, 2005 ,
109
, 11037 - 11045 .
Merkina , E.E. ; Fox , K.R. ; Kinetic stability of intermolecular DNA quadruplexes ;
Biophys.
J.
, 2005 ,
89
, 365 - 373 .
Brown , N.M. ; Rachwal , P.A. ; Brown , T. ; Fox , K.R. ; Exceptionally slow kinetics of the
intramolecular quadruplex formed by the
Oxytricha
telomeric repeat;
Org. Biomol.
Chem.
, 2005 ,
3
, 4153 - 4157 .
Risitano , A. ; Fox , K.R. ; Inosine substitutions demonstrate that intramolecular DNA
quadruplexes adopt different conformations in the presence of sodium and potassium;
Bioorg. Med. Chem. Lett.
, 2005 ,
15
, 2047 - 2050 .
Cai , M.M. ; Shi , X.D. ; Sidorov , V. ; Fabris , D. ; Lam , Y.F. ; Davis , J.T. ; Cation - directed self -
assembly of lipophilic nucleosides: the cation's central role in the structure and dynamics
of a hydrogen- bonded assembly ;
Tetrahedron
, 2002 ,
58
, 661 - 671 .
113.
114.
115.
116.
117.
118.
119.
120.
121.
122.
123.
