Biology Reference
In-Depth Information
•
Schuster, S. and Hilgetag, C. (1995). What information about the conserved-moiety structure of chemical reaction systems
can be derived from their stoichiometry? J. Phys. Chem.
99
, 8017-8023.
•
Schuster, S. and Hofer, T. (1991). Determining all extreme semi-positive conservation relations in chemical reaction
systems. A test criterion for conservativity. J. Chem. Soc. Faraday Trans.
87
, 2561-2566.
•
Schuster, S., Fell, D. A. and Dandekar, T. (2000). A general definition of metabolic pathways useful for systematic
organization and analysis of complex metabolic networks. Nat. Biotechnol.
18
, 326-332.
•
Schuster, S., Pfeiffer, T., Moldenhauer, F., Koch, I. and Dandekar, T. (2002a). Exploring the pathway structure of
metabolism: decomposition into subnetworks and application to
Mycoplasma pneumoniae
. Bioinformatics
18
, 351-361.
•
Schuster, S., Hilgetag, C., Woods, J. H. and Fell, D. A. (2002b). Elementary flux modes in biochemical reaction systems:
Algebraic properties, validated calculation procedure and example from nucleotide metabolism.
J. Math.
Biol.
45
,
153-181.
•
Selkov, E., Basmanova, S., Gaasterland, T., Goryanin, I., Gretchkin, Y., Maltsev, N., Nenashev, V., Overbeek, R.,
Panyushkina, E., Pronevitch, L., Selkov, E. Jr. and Yunus, I. (1996). The metabolic pathway collection from EMP: The
enzymes and metabolic pathways database. Nucleic Acids Res.
24
, 26-28.
•
Selkov, E., Maltsev, N., Olsen, G. J., Overbeek, R. and Whitman, W. B. (1997). A reconstruction of the metabolism of
Methanococcus jannaschii
from sequence data. Gene
197
, GC11-GC26.
•
Starke, P. H. (1990). Analyse von Petri-Netz-Modellen. B. G. Teubner, Stuttgart.
•
Stryer, L. (1995). Biochemistry. Freeman, New York.
•
Tanimoto, S., Yamauchi, M. and Watanabe, T. (1996). Finding minimal siphons in general Petri nets. IEICE Trans. on
Fundamentals in Electronics, Communications and Computer Science,
E79-A
, 1817-1824.
•
Teusink, B., Walsh, M. C., van Dam, K. and Westerhoff, H. V. (1998).
The danger of metabolic pathways with turbo
design. Trends Biochem Sci.
23
, 162-169.
•
Van Dien, S. J. and Lidstrom, M. E. (2002). Stoichiometric model for evaluating the metabolic capabilities of the facul-
tative methylotroph
Methylobacterium extorquens
AM1, with application to reconstruction of C(3) and C(4) metabolism.
Biotechnol Bioeng.
78
, 296-312.
•
Varpaaniemi, K. (1993). Efficient detection of deadlock in Petri nets. Licentiate's thesis, Helsinki University of Technology,
Department of Computer Science and Engineering, Digital Systems Laboratory.
•
Yamauchi, M. and Watanabe, T. (1999). Time complexity analysis of the minimal siphon extraction problem of Petri nets.
IEICE Trans. on Fundamentals of Electronics, Communications and Computer Sciences,
E82-A
, 2558-2565.
•
Yamauchi, M., Tanimoto, S. and Watanabe, T. (1996). Finding a minimal siphon containing specified places in a general
Petri net. IEICE Trans. on Fundamentals in Electronics, Communications and Computer Science,
E79-A
, 1825-1828.
