Biology Reference
In-Depth Information
REFERENCES
•
Abovich, N. and Rosbash, M. (1997). Cross-intron bridging interactions in the yeast commitment complex are conserved
in mammals. Cell
89
, 403-412.
•
Baumgarten, B. (1996). Petri-Netze, Grundlagen und Anwendungen. Second edition, Spektrum Akademischer Verlag,
Heidelberg.
•
Beggs, J. D. (2005). Lsm proteins and RNA processing. Biochem. Soc. Trans.
33
, 433-438.
•
Behzadnia, N., Hartmuth, K., Will, C. L. and L uhrmann, R. (2006).
Functional spliceosomal A complexes can be
assembled in vitro in the absence of a penta-snRNP. RNA
12
, 1738-1746.
•
Bentley, D. (2002). The mrna assembly line: transcription and processing machines in the same factory. Curr. Opin. Cell.
Biol.
14
, 336-342.
•
Berglund, J. A., Abovich, N. and Rosbash, M. (1998). A cooperative interaction between U2AF65 and mBBP/SF1
facilitates branchpoint region recognition. Genes Dev.
12
, 858-867.
•
Boehringer, D., Makarov, E. M., Sander, B., Makarova, O. V., Kastner, B., L uhrmann, R. and Stark, H. (2004). Three-
dimensional structure of a pre-catalytic human spliceosomal complex B. Nat. Struct. Mol. Biol.
11
, 463-468.
•
Bortfeldt, R., Schindler, S., Szafranski, K., Schuster, S. and Holste, D. (2008). Comparative analysis of sequence features
involved in the recognition of tandem splice sites. BMC Genomics
9
, 202.
•
Brett, D., Hanke, J., Lehmann, G., Haase, S., Delbr uck, S., Krueger, S., Reich, J. and Bork, P. (2000). EST comparison
indicates 38% of human mRNAs contain possible alternative splice forms. FEBS Lett.
474
, 83-86.
•
Brow, D. A. (2002). Allosteric cascade of spliceosome activation. Annu. Rev. Genet.
36
, 333-360.
•
Burgess, S. M. and Guthrie, C. (1993). A mechanism to enhance mRNA splicing fidelity: the RNA-dependent ATPase
Prp16 governs usage of a discard pathway for aberrant lariat intermediates. Cell
73
, 1377-1391.
•
Cao, W. and Garcia-Blanco, M. A. (1998). A serine/arginine-rich domain in the human U1 70k protein is necessary and
sufficient for ASF/SF2 binding. J. Biol. Chem.
273
, 20629-20635.
•
Chaouiya, C. (2007). Petri net modelling of biological networks. Brief. Bioinform.
8
, 210-219.
•
Chen, J. Y.-F., Stands, L., Staley, J. P., Jackups, R. R., Latus, L. J. and Chang, T.-H. (2001). Specific alterations of U1-C
protein or U1 small nuclear RNA can eliminate the requirement of Prp28p, an essential DEAD box splicing factor. Mol.
Cell.
7
, 227-232.
•
Chen, Y.-I. G., Moore, R. E., Ge, H. Y., Young, M. K., Lee, T. D. and Stevens, S. W. (2007). Proteomic analysis of
in vivo
-assembled pre-mRNA splicing complexes expands the catalog of participating factors. Nucleic Acids Res.
35
,
3928-3944.
•
Cormack, R. M. (1971). A review of classification. J. R. Stat. Soc.
134
, 321-367.
•
Crispino, J. D. and Sharp, P. A. (1995).
A U6 snRNA:pre-mRNA interaction can be rate-limiting for U1-independent
splicing. Genes Dev.
9
, 2314-2323.
•
Crispino, J. D., Mermoud, J. E., Lamond, A. I. and Sharp, P. A. (1996).
Cis
-acting elements distinct from the 5' splice
site promote U1-independent pre-mRNA splicing. RNA
2
, 664-673.
•
Das, R., Zhou, Z. and Reed, R. (2000).
Functional association of U2 snRNP with the ATP-independent spliceosomal
complex E. Mol. Cell.
5
, 779-787.
•
Del Gatto-Konczak, F., Bourgeois, C. F., Le Guiner, C., Kister, L., Gesnel, M.-C., St evenin, J. and Breathnach, R. (2000).
The RNA-binding protein TIA-1 is a novel mammalian splicing regulator acting through intron sequences adjacent to a 5'
splice site. Mol. Cell. Biol.
20
, 6287-99.
•
Donmez, G., Hartmuth, K., Kastner, B., Will, C. L. and L uhrmann, R. (2007). The 5' end of U2 snRNA is in close
proximity to U1 and functional sites of the pre-mRNA in early spliceosomal complexes. Mol. Cell.
25
, 399-411.
•
Du, H. and Rosbash, M. (2002). The U1 snRNP protein U1C recognizes the 5' splice site in the absence of base pairing.
Nature
419
, 86-90.
•
Dybkov, O., Will, C. L., Deckert, J., Behzadnia, N., Hartmuth, K. and L uhrmann, R. (2006). U2 snRNA-protein contacts
in purified human 17S U2 snRNPs and in spliceosomal A and B complexes. Mol. Cell. Biol.
26
, 2803-2816.
•
Fleckner, J., Zhang, M., Valcarcel, J. and Green, M. R. (1997). U2AF65 recruits a novel human DEAD box protein
required for the U2 snRNPbranchpoint interaction. Genes Dev.
11
, 1864-1872.
•
F orch, P., Puig, O., Martenez, C., Seraphin, B. and Valcarcel, J. (2002). The splicing regulator TIA-1 interacts with U1-C
to promote U1 snRNP recruitment to 5' splice sites. EMBO J.
21
, 6882-6892.
•
Fortes, P., Bilbao-Cortes, D., Fornerod, M., Rigaut, G., Raymond, W., Seraphin, B. and Mattaj, I. W. (1999). Luc7p, a
novel yeast U1 snRNP protein with a role in 5' splice site recognition. Genes Dev.
13
, 2425-2438.
•
Gottschalk, A., Kastner, B., L uhrmann, R. and Fabrizio, P. (2001). The yeast U5 snrnp coisolated with the U1 snrnp has
an unexpected protein composition and includes the splicing factor Aar2p. RNA
7
, 1554-1565.
•
Gozani, O., Potashkin, J. and Reed, R. (1998). A potential role for U2AF-SAP 155 interactions in recruiting U2 snRNP
to the branch site. Mol. Cell. Biol.
18
, 4752-4760.
