Biology Reference
In-Depth Information
Fig. 8. CSMLDB Search dialog. Shown are the results of a search for “sam” to in CSMLDB 8.4 (CSMLDB Professional). By
default, the search results are sorted by ID.
MODULES OF CIO 4.0
CSMLDB Search Module
The “CSMLDB Search Module” can store each CSML pathway model into an XML database and
can search the pathway content via GUI interface (Fig. 8). As of September 2009, TRANSPATH
Academic and TRANSPATH Professional are fully supported. CSMLDB Academic originates from
the academic version of TRANSPATH version 7.4 with Transpath2CSML technology [31] and will be
available to academic users via BIOBASE GmbH (trial version of which is available for one month
after registration). CSMLDB Professional originates from the commercial version of TRANSPATH
version 8.4 with Transpath2CSML technology and contains more than 100,000 reactions discovered in
mammalians (Table 2).
The CSMLDB GUI provides three tabs, “Entity”, “Process” and “Fact” and can search over name,
ID and synonyms for entity, process and fact elements (Fig. 8). The matched result can be placed by
