Biology Reference
In-Depth Information
Table 1
Transitions in Figs 7 and 9
From
To
Name
Type
Delay/Speed
Variable
Weight
Type
Variable
Weight
Comment
T
1
m
4
/
10
m
4
C
0
N
-
-
degradation rate of CAP
T
2
m
14
/
10
m
14
C
0
N
-
-
degradation rate of mRNA
repressor
T
3
C
m
15
/
10
m
15
0
N
-
-
degradation rate of repressor
T
4
C
m17/10
m17
0
N
-
-
degradation
rate
of
repressor
binding to DNA
T
5
C
m18/10
m18
0
N
-
-
degradation rate of repressor not
binding to DNA
T6
C
m7/10
m7
0
N
-
-
degradation rate of repressor
binding to operator region
T7
C
m19/10
m19
0
N
-
-
degradation rate of lacZ mRNA
T8
C
m20/10000
m20
0
N
-
-
degradation rate of LacZ
T9
C
m23/10
m23
0
N
-
-
degradation rate of lacY mRNA
T10
C
m24/10
m24
0
N
-
-
degradation rate of LacY
T11
C
m27/10
m27
0
N
-
-
degradation rate of lacA mRNA
T12
C
m28/10000
m28
0
N
-
-
degradation rate of LacA
T13
C
m29/10000
m29
0
N
-
-
degradation rate of lactose outside
of cell of lactose outside of cell
T14
C
m9/10000
m9
0
N
-
-
degradation rate of lactose
T15
C
m8/2
m8
0
N
-
-
degradation rate of arolactose
T16
C
m30/10000
m30
0
N
-
-
degradation rate of galactose
T17
C
m17/10000
m17
0
N
-
-
degradation rate of glucose
T18
C
m10/10000
m10
0
N
-
-
degradation rate of complex
T19
C
m5/10000
m5
0
N
-
-
degradation rate of cAMP
T20
C
m11/10000
m11
0
N
-
-
degradation rate of AMP
T21
C
m12/10
m12
0
N
-
-
degradation rate of ADP
T42
D
1
m2
1
N
-
-
CAP releasing rate
T43
D
1
m3
1
N
-
-
repressor releasing rate
T45
C
1
-
-
N
m4
-
CAP production rate
T46
D
1
-
-
-
m13
1
activation of repressor gene
T57
D
1.082
m13
1
N
m14
1
transcription rate of repressor
T58
C
m14
m14
0
N
m15
-
translation rate of repressor
mRNA
T59
C
-
m15
-
C
m16
-
conformation rate of repressor
T60
C
96
×
m16/100
m16
0
N
m7
-
repressor binding rate to operator
T61
C
399
×
m16/10000
m16
0
N
m17
-
repressor binding rate to the DNA
other than repressor site
T62
C
m16/1000
m16
0
N
m18
-
rate of repressor which does not
bind any DNA
T63
D
1
m4
1
T
m2
1
binding rate of CAP to the CAP
site
m5
100
T
T64
D
1
m7
1
T
m3
1
binding rate of repressor to the
operon
m8
4
I
T65
D
1
m2
1
T
m1
1
logical operation of the places
“CAP site” and “operator”
m3
1
I
T66
D
3.075
m1
1
T
m19
1
transription rate of lacZ
m21
1
T67
C
m19
m19
1
T
m20
-
translation rate of lacZ
T68
D
0.051
m21
1
N
m22
1
moving rate of RNA polymerase
