Genetic Improvement of Grain Quality in Japonica Rice - Translational Genomics for Crop Breeding: Abiotic Stress, Yield and Quality - page 156

chalky and translucent parts in rice grains. Food Chem-
istry 90:39-46.
Comparot-Moss, S., and K. Denyer 2009. The evolution
of the starch biosynthetic pathway in cereals and other
grasses. JExpBot 60:2481-2492.
Dian, W., H. Jiang, Q. Chen, F. Liu, and P. Wu. 2003.
Cloning and characterization of the granule-bound starch
synthase II gene in rice: Gene expression is regulated by
the nitrogen level, sugar and circadian rhythm. Planta
218:261-268.
Dian, W., H. Jiang, and P. Wu. 2005. Evolution and expres-
sion analysis of starch synthase III and IV in rice. JExp
Bot 56:623-632.
Dubouzet, J. G., A. Ishihara, F. Matsuda, H. Miyagawa, H.
Iwata, and K. Wakasa. 2007. Integrated metabolomic and
transcriptomic analyses of high-tryptophan rice express-
ing a mutant anthranilate synthase alpha subunit. JExp
Bot 58:3309-3321.
Ebana, K., J. Yonemaru, S. Fukuoka, H. Iwata, H.
Kanamori, N. Namiki, H. Nagasaki, and M. Yano.
2010. Genetic structure revealed by a whole-genome
single-nucleotide polymorphism survey of diverse acces-
sions of cultivated Asian rice ( Oryza sativa L.). Breed Sci
60:390-397.
Ebitani, T., Y. Takeuchi, Y. Nonoue, T. Yamamoto, K.
Takeuchi, and M. Yano. 2005. Construction and evalua-
tion of chromosome segment substitution lines carrying
overlapping chromosome segments of indica rice culti-
var Kasalath in a genetic background of japonica elite
cultivar Koshihikari. Breed Sci 55:65-73.
Famoso, A. N., K. Zhao, R. T. Clark, C. W. Tung, M.
H. Wright, C. Bustamante, L. V. Kochian, and S. R.
McCouch. 2011. Genetic architecture of aluminum toler-
ance in rice ( Oryza sativa ) determined through genome-
wide association analysis and QTL mapping. PLoS Genet
7:e1002221.
Fan, C., Y. Xing, H. Mao, T. Lu, B. Han, C. Xu, X. Li,
and Q. Zhang. 2006. GS3 , a major QTL for grain length
and weight and minor QTL for grain width and thickness
in rice, encodes a putative transmembrane protein. Theor
Appl Genet 112:1164-1171.
Fitzgerald, M. A., M. Martin, R. M. Ward, W. D. Park,
and H. J. Shead. 2003. Viscosity of rice flour: A rheo-
logical and biological study. J Agr Food Chem 51:2295-
2299.
Fitzgerald, M. A., S. R. McCouch, and R. D. Hall. 2009.
Not just a grain of rice: The quest for quality. Trends
Plant Sci 14:133-139.
Fujita, N., Y. Toyosawa, Y. Utsumi, T. Higuchi, I.
Hanashiro, A. Ikegami, S. Akuzawa, M. Yoshida, A.
Mori, K. Inomata, et al. 2009. Characterization of pul-
lulanase ( PUL )-deficient mutants of rice ( Oryza sativa
L.) and the function of PUL on starch biosynthesis in
the developing rice endosperm. JExpBot 60:1009-
1023.
Fujita, N., M. Yoshida, N. Asakura, T. Ohdan, A. Miyao,
H. Hirochika, and

characterization of starch synthase I using mutants in
rice. Plant Physiol 140:1070-1084.
Fujita, N., M. Yoshida, T. Kondo, K. Saito, Y. Utsumi, T.
Tokunaga, A. Nishi, H. Satoh, J. H. Park, J. L. Jane,
et al. 2007. Characterization of SSIIIa-deficient mutants
of rice: The function of SSIIIa and pleiotropic effects by
SSIIIa deficiency in the rice endosperm. Plant Physiol
144:2009-2023.
Han, X. Z., and B. R. Hamaker. 2001. Amylopectin fine
structure and rice starch paste breakdown. Cereal Sci
34:279-284.
Hanashiro, I., K. Itoh, Y. Kuratomi, M. Yamazaki, T.
Igarashi, J. Matsugasako, and Y. Takeda. 2008. Granule-
bound starch synthase I is responsible for biosynthesis of
extra-long unit chains of amylopectin in rice. Plant Cell
Physiol 49:925-933.
Hizukuri, S., Y. Takeda, N. Maruta, and B. O. Juliano.
1989. Molecular structure of rice starch. Carbohydr Res
189:227-235.
Hoa, T. T., S. Al-Babili, P. Schaub, I. Potrykus, and
P. Beyer. 2003. Golden Indica and Japonica rice lines
amenable to deregulation. Plant Physiol 133:161-169.
Huang, X., Y. Zhao, X. Wei, C. Li, A. Wang, Q. Zhao, W.
Li, Y. Guo, L. Deng, C. Zhu, et al. 2012. Genome-wide
association study of flowering time and grain yield traits
in a worldwide collection of rice germplasm. Nat Genet
44:32-39.
Ikeno, S. 1914. Uber die Bestaubung und die Bastardierung
von Ries. Z Pflanzenz ucht 2:495-503.
IRGSP. 2005. The map-based sequence of the rice genome.
Nature 436:793-800.
Ishimaru, Y., K. Bashir, M. Fujimoto, G. An, R. N. Itai,
N. Tsutsumi, H. Nakanishi, and N. K. Nishizawa. 2009.
Rice-specific mitochondrial iron-regulated gene (MIR)
plays an important role in iron homeostasis. Mol Plant
2:1059-1066.
Isshiki, M., Y. Matsuda, A. Takasaki, H. L. Wong, H. Satoh,
and K. Shimamoto. 2008. Du3 , a mRNA cap-binding
protein gene, regulates amylose content in Japonica rice
seeds. Plant Biotechnol J 25:483-487.
Isshiki, M., K. Morino, M. Nakajima, R. J. Okagaki, S. R.
Wessler, T. Izawa, and K. Shimamoto. 1998. A naturally
occurring functional allele of the rice waxy locus has a
GT to TT mutation at the 5' splice site of the first intron.
Plant J 15:133-138.
Iwata, H., Y. Uga, Y. Yoshioka, K. Ebana, and T. Hayashi.
2007. Bayesian association mapping of multiple quan-
titative trait loci and its application to the analysis of
genetic variation among Oryza sativa L. germplasms.
Theor Appl Genet 114:1437-1449.
Jiang, H., W. Dian, and P. Wu. 2003. Effect of high temper-
ature on fine structure of amylopectin in rice endosperm
by reducing the activity of the starch branching enzyme.
Phytochemistry 63:53-59.
Jodari, F., and S. D. Linscombe. 1996. Grain fissuring and
milling yields of rice cultivars as influenced by environ-
mental conditions. Crop Sci 36:1496-1502. Y. Nakamura. 2006. Function and