Geoscience Reference
In-Depth Information
5.4.1
General Form of Basic Priors
In a frequentist setting, overfitting of a particular function f
is avoided
by defining a roughness penalty on the regression coefficients; see, for instance,
Fahrmeir et al. ( 2013 ) in the context of structured additive regression. In a Bayesian
framework, a standard smoothness prior is a (possibly improper) Gaussian prior of
the form
D
Z
ˇ
1
2
rk . K / =2
exp
1
2 2 ˇ 0 K
p. ˇj 2 / /
ˇ
I. A
ˇ D 0 /;
(5.8)
where I. / is the indicator function. The key components of the prior are the penalty
matrix K , the variance parameter j , and the constraint A
. Usually the
penalty matrix is rank deficient, that is, rk. K /<K, resulting in a partially improper
prior.
The amount of smoothness is governed by the variance parameter 2 . A conjugate
inverse Gamma prior is employed for 2 (as well as for the error variance parameter
2 in models with Gaussian responses), that is, 2
ˇ D 0
IG.a;b/ with small values
such as a D b D 0:001 for the hyperparameters a and b resulting in an
uninformative prior on the log scale.
The term I. A
ˇ D 0 / imposes required identifiability constraints on the
parameter vector. A straightforward choice is A D .1;:::;1/, that is, the regression
coefficients are centered around zero.
5.4.2
Continuous Covariate Effects
For a continuous covariate z , our basic approach for modeling, a smooth function
f is using P-splines introduced in a frequentist setting by Eilers and Marx ( 1996 )
and in a Bayesian version by Lang and Brezger ( 2004 ). P-splines assume that the
unknown functions can be approximated by a polynomial spline which can be
written in terms of a linear combination of B-spline basis functions. Hence, the
columns of the design matrix Z are given by the B-spline basis functions evaluated
at the observations z i . Lang and Brezger ( 2004 ) propose to use first- or second-order
random walks as smoothness priors for the regression coefficients, that is,
ˇ k
D ˇ k1 C u k ;
or
ˇ k
D k1 ˇ k2 C u k ;
(5.9)
with Gaussian errors u k N.0; 2 / and diffuse priors p.ˇ 1 / / const, or p.ˇ 1 / and
p.ˇ 2 / / const, for initial values. This prior is of the form ( 5.8 ) with penalty matrix
given by K D D 0 D ,where D is a first- or second-order difference matrix.
 
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