Biomedical Engineering Reference
In-Depth Information
3. Vinayagam, A., del Val, C., Schubert, F. et al . (2006) GOPET: a tool for automated predictions
of Gene Ontology terms. BMC Bioinformatics , 7 , 161.
4. Pellegrini, M., Marcotte, E.M., Thompson, M.J. et al . (1999) Assigning protein functions by
comparative genome analysis: Protein phylogenetic profiles. Proceedings of the National Academy
of Sciences of the United States of America , 96 , 4285-4288. This is the pioneering work which
reported that proteins with similar phylogenetic profiles tend to exhibit conserved function.
5. Wu, J., Kasif, S. and DeLisi, C. (2003) Identification of functional links between genes using
phylogenetic profiles. Bioinformatics , 19 , 1524-1530.
6. Hawkins, T., Luban, S. and Kihara, D. (2006) Enhanced automated function prediction using
distantly related sequences and contextual association by PFP. Protein Science , 15 , 1550-1556.
7. Brun, C., Chevenet, F., Martin, D. et al . (2003) Functional classification of proteins for the
prediction of cellular function from a protein-protein interaction network. Genome Biology , 5 ,R6.
8. Chen, J., Hsu, W., Lee, M., and Ng, S.-K. (2007) Labeling network motifs in protein interactomes
for protein function prediction. Proceedings of the IEEE 23rd International Conference on Data
Engineering, pp. 546-555.
9. Chen, Y. and Xu, D. (2004) Global protein function annotation through mining genome-scale
data in yeast Saccharomyces cerevisiae . Nucleic Acids Research , 32 , 6414-6424.
10. Chua, H.N., Sung, W.K. and Wong, L. (2006) Exploiting indirect neighbours and topolog-
ical weight to predict protein function from protein-protein interactions. Bioinformatics , 22 ,
1623-1630.
11. Deng, M., Zhang, K., Mehta, S. et al . (2003) Prediction of protein function using protein-protein
interaction data. Journal of Computational Biology , 10 , 947-960.
12. Kirac, M. and Ozsoyoglu, G. (2008) Protein function prediction based on patterns in biological
networks. Proceedings of 12th International Conference on Research in Computational Molecular
Biology, pp. 197-213.
13. Legrain, P., Wojcik, J. and Gauthier, J.M. (2001) Protein-protein interaction maps: a lead towards
cellular functions. Trends in Genetics , 17 , 346-352.
14. Letovsky, S. and Kasif, S. (2003) Predicting protein function from protein/protein interaction data:
a probabilistic approach. Bioinformatics , 19 (Suppl. 1), i197-i204.
15. Samanta, M.P. and Liang, S. (2003) Predicting protein functions from redundancies in large-scale
protein interaction networks. Proceedings of the National Academy of Sciences of the United States
of America , 100 , 12579-12583.
16. Ferre, S. and King, R.D. (2006) Finding motifs in protein secondary structure for use in function
prediction. Journal of Computational Biology , 13 , 719-731.
17. Laskowski, R.A., Watson, J.D. and Thornton, J.M. (2005) ProFunc: a server for predicting protein
function from 3D structure. Nucleic Acids Research , 33 , W89-W93.
18. Pazos, F. and Sternberg, M.J. (2004) Automated prediction of protein function and detection of
functional sites from structure. Proceedings of the National Academy of Sciences of the United
States of America , 101 , 14754-14759.
19. Huynen, M., Snel, B., Lathe, W. III and Bork, P. (2000) Predicting protein function by genomic
context: quantitative evaluation and qualitative inferences. Genome Research , 10 , 1204-1210.
20. Hughes, T.R., Marton, M.J., Jones, A.R. et al . (2000) Functional discovery via a compendium of
expression profiles. Cell , 102 , 109-126.
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