Biomedical Engineering Reference
In-Depth Information
23. Szabo, A., Boucher, K., Carroll, W.L.
et al
. (2002) Variable selection and pattern recognition
with gene expression data generated by the microarray technology.
Mathematical Biosciences
,
176
, 71-98.
24. Pfaffl, M.W., Tichopad, A., Prgomet, C. and Neuvians, T.P. (2004) Determination of stable
housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper -
Excel-based tool using pair-wise correlations.
Biotechnology Letters
,
26
, 509-515.
25. Akilesh, S., Shaffer, D.J. and Roopenian, D. (2003) Customized molecular phenotyping by quan-
titative gene expression and pattern recognition analysis.
Genome Research
,
13
, 1719-1727.
26. Andersen, C.L., Jensen, J.L. and Orntoft, T.F. (2004) Normalization of real-time quantitative
reverse transcription-PCR data: a model-based variance estimation approach to identify genes
suited for normalization, applied to bladder and colon cancer data sets.
Cancer Research
,
64
,
5245-5250.
27. Haller, F., Kulle, B., Schwager, S.
et al
. (2004) Equivalence test in quantitative reverse tran-
scription polymerase chain reaction: confirmation of reference genes suitable for normalization.
Analytical Biochemistry
,
335
, 1-9.
28. Abruzzo, L.V., Wang, J., Kapoor, M.
et al
. (2005) Biological validation of differentially expressed
genes in chronic lymphocytic leukemia identified by applying multiple statistical methods to
oligonucleotide microarrays.
Journal of Molecular Diagnostics
,
7
, 337-345.
29. Kanno, J., Aisaki, K., Igarashi, K.
et al
. (2006) “Per cell” normalization method for mRNA
measurement by quantitative PCR and microarrays.
BMC Genomics
,
7
, 64.
30. Bustin, S.A. (2002) Quantification of mRNA using real-time reverse transcription PCR (RT-PCR):
trends and problems.
Journal of Molecular Endocrinology
,
29
, 23-39.
31. Bustin, S.A. (2005) Real-time, fluorescence-based quantitative PCR: a snapshot of current proce-
dures and preferences.
Expert Review of Molecular Diagnostics
,
5
, 493-498.
32. Bustin, S.A., Benes, V., Nolan, T. and Pfaffl, M.W. (2005) Quantitative real-time RT-PCR - a
perspective.
Journal of Molecular Endocrinology
,
34
, 597-601.
33. Bustin, S.A. and Mueller, R. (2006) Real-time reverse transcription PCR and the detection of
occult disease in colorectal cancer.
Molecular Aspects of Medicine
,
27
, 192-223.
34. Valasek, M.A. and Repa, J.J. (2005) The power of real-time PCR.
Advances in Physiology Edu-
cation
,
29
, 151-159.
35. Picard, C., Silvy, M. and Gabert, J. (2006) Overview of real-time RT-PCR strategies for quantifi-
cation of gene rearrangements in the myeloid malignancies.
Methods in Molecular Biology
,
125
,
27-68.
36. Bustin, S.A. (2004)
A-Z of Quantitative PCR
, IUL Press, La Jolla, CA. Complete guide to all
aspects of qPCR analysis.
37. Willey, J.C., Crawford, E.L., Jackson, C.M.
et al
. (1998) Expression measurement of many genes
simultaneously by quantitative RT-PCR using standardized mixtures of competitive templates.
American Journal of Respiratory Cell and Molecular Biology
,
19
, 6-17.
38. Flagella, M., Bui, S., Zheng, Z.
et al
. (2006) A multiplex branched DNA assay for parallel
quantitative gene expression profiling.
Analytical Biochemistry
,
352
, 50-60.
39. Freeman, W.M., Walker, S.J. and Vrana, K.E. (1999) Quantitative RT-PCR: pitfalls and potential.
Biotechniques
,
26
, 112-115.