Biomedical Engineering Reference
In-Depth Information
22. Carlson, C.S., Eberle, M.A., Rieder, M.J. et al . (2004) Selecting a maximally informative set of
single-nucleotide polymorphisms for association analyses using linkage disequilibrium. American
Journal of Human Genetics , 74 , 106 -120.
23. Pritchard, J.K. and Przeworski, M. (2001) Linkage disequilibrium in humans: models and data.
American Journal of Human Genetics , 69 , 1 - 14.
24. Moskvina, V. and O'Donovan, M.C. (2007) Detailed analysis of the relative power of direct
and indirect association studies and the implications for their interpretation. Human Heredity , 64 ,
63 - 73.
25. Edlund, C.K., Lee, W.H., Li, D., Van Den Berg, D.J. and Conti, D.V. (2008) Snagger: a user-
friendly program for incorporating additional information for tagSNP selection. BMC Bioinfor-
matics , 9 , 174.
26. De Bakker, P.I., Yelensky, R., Pe'er, I. et al . (2005) Efficiency and power in genetic association
studies. Nature Genetics , 37 , 1217 -1223.
27. Johnson, A.D., Handsaker, R.E., Pulit, S.L. et al . (2008) SNAP: a web-based tool for identification
and annotation of proxy SNPs using HapMap. Bioinformatics (Oxford, England) , 24 , 2938 - 2939.
28. Li, C., Li, M., Long, J.R. et al . (2008) Evaluating cost efficiency of SNP chips in genome-wide
association studies. Genetic Epidemiology , 32 , 387 - 395.
29. Li, M., Li, C. and Guan, W. (2008) Evaluation of coverage variation of SNP chips for genome-wide
association studies. European Journal of Human Genetics , 16 , 635 - 643.
30. Saccone, S.F., Bierut, L.J., Chesler, E.J. et al . (2009) Supplementing high-density SNP microarrays
for additional coverage of disease-related genes: addiction as a paradigm. PLoS One , 4 , e5225.
31. Keating, B.J., Tischfield, S., Murray, S.S. et al . (2008) Concept, design and implementation of
a cardiovascular gene-centric 50 K SNP array for large-scale genomic association studies. PLoS
ONE , 3 , e3583.
32. Wigginton, J.E. and Abecasis, G.R. (2005) PEDSTATS: descriptive statistics, graphics and quality
assessment for gene mapping data. Bioinformatics (Oxford, England) , 21 , 3445 - 3447. Describes
PEDSTATS, a user-friendly program for performing quality control checks of both family-based
and unrelated samples.
33. Purcell, S., Neale, B., Todd-Brown, K. et al . (2007) PLINK: a tool set for whole-genome associa-
tion and population-based linkage analyses. American Journal of Human Genetics , 81 , 559 - 575.
Introduces and describes PLINK, an excellent and widely used software package for analysis of
genome-wide SNP data.
34. Suarez, B.K., Taylor, C., Bertelsen, S. et al . (2005) An analysis of identical single-nucleotide
polymorphisms genotyped by two different platforms. BMC Genetics , 6 (Suppl. 1), S152.
35. Pritchard, J.K., Stephens, M. and Donnelly, P. (2000) Inference of population structure using
multilocus genotype data. Genetics , 155 , 945 - 959.
36. Devlin, B. and Roeder, K. (1999) Genomic control for association studies. Biometrics , 55 ,
997 - 1004.
37. Price, A.L., Patterson, N.J., Plenge, R.M. et al . (2006) Principal components analysis corrects for
stratification in genome-wide association studies. Nature Genetics , 38 , 904 - 909. The publication
for EIGENSTRAT, an excellent and popular program for testing and correcting for population
stratification.
38. Tian, C., Hinds, D.A., Shigeta, R. et al . (2007) A genomewide single-nucleotide -polymorphism
panel for Mexican American admixture mapping. American Journal of Human Genetics , 80 ,
1014 -1023.
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