Biomedical Engineering Reference
In-Depth Information
29. Schuster S, Fell D, Dandekar T. 2000. A general definition of metabolic pathways useful for
systematic organization and analysis of complex metabolic networks.
Nature Biotechnol
18
:326-332.
30. Takahashi K, Yugi K, Hashimoto K, Yamada Y, Pickett C, Tomita M. 2002. Computational
challenges in cell simulation: a software engineering approach.
IEEE Intelligent Syst
17
(5):64-
71.
31. Takahashi K, Ishikawa N, Sadamoto Y, Sasamoto H, Ohta S, Shiozawa A, Miyoshi M, Naito
Y, Nakayama Y, Tomita M. In press. E-Cell 2: multi-platform E-Cell simulation system.
Bio-
informatics
.
32. Tomita M. 2001. Whole cell simulation: a grand challenge of the 21st century.
Trends Biotech-
nol
19
:205-210.
33. Tomita M. 2002. Towards computer aided design (CAD) of useful microorganisms.
Bioinfor-
matics
17
:1091-1092.
34. Tomita M, Hashimoto K, Takahashi K, Shimizu T, Matsuzaki Y, Miyoshi F, Saito K, Tanida
S, Yugi K, Venter JC, Hutchinson CA. 1999. E-Cell: software environment for whole cell
simulation.
Bioinformatics
15
(1):72-84.
35. Voit EO. 2000.
Computational analysis of biochemical systems: a practical guide for biochem-
ists and molecular biologists
. Cambridge University, Cambridge.
36. Voit EO. 2002. Models-of-data and models-of-processes in the post-genomic era.
Math Biosci
180
:263-274.
37. Welch GR, Easterby JS. 1994. Metabolic channeling versus free diffusion: transition-time
analysis.
Trends Biochem Sci
19
:193-197.
38.
Wiener N. 1948
Cybernetics: control and communication in animal and the machine
. Wiley &
Sons, New York.
39.
Wolkenhauer O. 2001. Systems biology: the reincarnation of systems theory applied in biol-
ogy?
Briefings in Bioinformatics
2
(3):258-270.
40.
Edwards JS, Palsson BØ. 2000. The
Escherichia coli
MG1655 in silico; metabolic genotype:
its definition, characteristics, and capabilities.
Proc Natl Acad Sci USA
97
:5528-5533.
41.
Selkov E, Basmanova S, Gaasterland T, Goryanin I, Gretchkin Y, Maltsev N, Nenashev V,
Overbeek R, Panyushkina E, Pronevitch L, Selkov Jr E, Yunus I. 1996. The metabolic pathway
collection from EMP: the enzymes and metabolic pathways database.
Nucleic Acids Res
24
(1):26-28.
