Biomedical Engineering Reference
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74. Klein RJ, Misulovin Z, Eddy SR. 2002. Noncoding RNA genes identified in AT-rich hyper-
thermophiles. Proc Natl Acad Sci USA 99 :7542-7547.
75. Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T. 2001. Identification of novel genes
coding for small expressed RNAs. Science 294 :853-857.
76. Laslett D, Canback B, Andersson S. 2002. BRUCE: a program for the detection of transfer-
messenger RNA genes in nucleotide sequences. Nucleic Acids Res 30 :3449-3453.
77. Lau NC, Lim LP, Weinstein EG, Bartel DP. 2001. An abundant class of tiny RNAs with prob-
able regulatory roles in Caenorhabditis elegans . Science 294 :858-862.
78. Le S-Y, Chen J-H, Currey KM, Maizel JV. 1988. A program for predicting significant RNA
secondary structures. CABIOS 4 :153-159.
79. Le SY, Zuker M. 1991. Predicting common foldings of homologous RNAs. J Biomol Struct
Dyn 8 :1027-1044.
80. Lee RC, Ambros V. 2001. An extensive class of small RNAs in Caenorhabditis elegans . Sci-
ence 294 :862-864.
81. Lee D, Han K. 2002. Prediction of RNA pseudoknots: comparative study of genetic algo-
rithms. Genome Informatics 13 :414-415.
82. Leydold J, Stadler PF. 1998. Minimal cycle basis, outerplanar graphs. Elec J Comb 5 :R16 (see
http://www.combinatorics.org).
83. Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA
genes in genomic sequence. Nucleic Acids Res 25 :955-964.
84. Lück R, Steger G, Riesner D. 1996. Thermodynamic prediction of conserved secondary struc-
ture: application to the RRE element of HIV, the tRNA-like element of CMV, and the mRNA
of prion protein. J Mol Biol 258 :813-826.
85. Lück R, Gräf S, Steger G. 1999. ConStruct: A tool for thermodynamic controlled prediction of
conserved secondary structure. Nucleic Acids Res 27 :4208-4217.
86. Lyngsö RB, Pedersen CNS. 2000. RNA pseudoknot prediction in energy-based models. J
Comput Biol 7 :409-427.
87. Macdonald PM. 1990. Bicoid mRNA localization signal: phylogenetic conservation of func-
tion and RNA secondary structure. Development 110 :161-171.
88. Macke TJ, Ecker DJ, Gutell RR, Gautheret D, Case DA, Sampath R. 2001. RNAMotif, an
RNA secondary structure definition and search algorithm. Nucleic Acids Res 29 :4724-4735.
89. Maidak BL, Cole JR, Lilburn TG, Parker Jr CT, Saxman PR, Farris RJ, Garrity GM, Olsen GJ,
Schmidt TM, Tiedje JM. 2001. The RDP-II (ribosomal database project). Nucleic Acids Res
29 :173-174.
90. Mandl CW, Holzmann H, Meixner T, Rauscher S, Stadler PF, Allison SL, Heinz FX. 1998.
Spontaneous and engineered deletions in the 3'-noncoding region of tick-borne encephalitis vi-
rus: construction of highly attenuated mutants of Flavivirus. J Virol 72 :2132-2140.
91. Mandl CW, Aberle JH, Aberle SW, Holzmann H, Allison SL, Heinz FX. 1998. In vitro-
synthesized infectious RNA as an attenuated live vaccine in a flavivirus model. Nature Med
4 :1438-1440.
92. Mathews DH, Sabina J, Zuker M, Turner H. 1999. Expanded sequence dependence of thermo-
dynamic parameters provides robust prediction of RNA secondary structure. J Mol Biol
288 :911-940.
93. Mattick JS. 1994. Introns: evolution and function. Curr Opin Genet Dev 4 :823-831.
94. Matzke M, Matzke, AJM, Kooter JM. 2001. RNA: guiding gene silencing. Science 293 :1080-
1083.
95. McCaskill JS. 1990. The equilibrium partition function and base pair binding probabilities for
RNA secondary structure. Biopolymers 29 :1105-1119.
96. Meyer C, Giegerich R. 2002. Matching and significance evaluation of combined se-
quence/structure motifs in RNA. Z Phys Chem 216 :193-216.
97.
Muller G, Gaspin C, Etienne A, Westhof E. 1993. Automatic display of RNA secondary struc-
tures. Comput Appl Biosci 9 :551-561.
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