Biomedical Engineering Reference
In-Depth Information
49. Schwikowski B, Uetz P, Fields S. 2000. A network of protein-protein interactions in yeast.
Nature Biotech
18
:1257-1261.
50. Shen-Orr S, Milo R, Mangan S, Alon U. 2002. Network motifs in the transcriptional regulation
network of
E. coli
.
Nature Genet
31
:64-68.
51. Solé R, Pastor-Satorras R, Smith E, Kepler T. 2002. A model of large-scale proteome evolu-
tion.
Adv Compl Sys
5
:43-54.
52. Uetz P, Giot L, Cagney G, Mansfield T, Judson R, Knight J, Lockshorn D, Narayan V, Srini-
vasan M, Pochart P. 2000. A comprehensive analysis of protein-protein interactions of
Sac-
charomyces cerevisiae
.
Nature
403
:623-627.
53. Vazquez A, Flammini A, Maritan A, Vespignani A. 2003. Modeling of protein interaction
networks.
ComPlexUs
1
:38-44.
54. Vogelstein B, Lane D, Levine A. 2000. Surfing the p53 network.
Nature
408
:307-310.
55. Wagner A. 2000. Mutational robustness in genetic networks of yeast.
Nature Genet
24
:355-
361.
56. Wagner A. 2001. The yeast protein interaction network evolves rapidly and contains few re-
dundant duplicate genes.
Mol Biol Evol
18
:1283-1292.
57. Wagner A, Fell DA. 2001. The small world inside large metabolic networks.
Proc Roy Soc
London Ser B
268
:1803-1810.
58. Walhout A, Sordella R, Lu X, Hartley J, Temple G, Brasch M, Thierry-Mieg N, Vidal M.
2000. Protein interaction mapping in
C. elegans
using proteins involved in vulval development.
Science
287
:116-122.
59. Wasserman S, Faust K. 1994.
Social network analysis: methods and applications
. Cambridge
UP, Cambridge.
60. Watts DJ, Strogatz SH. 1998. Collective dynamics of small-world networks.
Nature
393
:440-
442.
61. Wolf Y, Karev G, Koonin E. 2002. Scale-free networks in biology: new insights into the fun-
damentals of evolution?
Bioessays
24
:105-109.
62. Wuchty S. 2001. Scale-free behavior in protein domain networks.
Mol Biol Evol
18
:1694-
1702.
63.
Wuchty S. 2002. Interaction and domain networks of yeast.
Proteomics
2
:1715-1723.
64.
Wuchty S. 2003. Small-worlds in RNA.
Nucleic Acids Res
31
:1108-1117.
65.
Xenarios I, Fernandez E, Salwinski L, Duan X, Thompson M, Marcotte E, Eisenberg D. 2001.
DIP: the database of interacting proteins: 2001 update.
Nucleic Acids Res
29
:239-241.
66.
Yook SH, Oltvai ZN, Barabási A-L. 2003. Functional and topological characterization of pro-
tein-protein interaction networks. Submitted.
