Biology Reference
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3.6 Coordinate system-free representation of form
We have described a coordinate system-free representation of a trian-
gle as the Euclidean distances among all possible landmark pairs. This
can be easily extended to an object with any number of landmarks,
that number represented by
K
, and any number of dimensions repre-
sented by
D
, such that
K
is strictly larger than
D
. Because all the
information about the form of an object defined on the basis of land-
mark coordinates is summarized in the collection of all distances
between pairs of landmarks, we call such a collection of distances (put
in matrix form) a
form matrix
. The number of unique pair-wise linear
distances in a form matrix is
L
where
L
K
(
K
1
)/
2
.
Definition of form matrix: The form matrix or Euclidean distance
matrix corresponding to the landmark coordinate matrix A is a
matrix consisting of all possible pair-wise distances between
landmarks. The form matrix of A is defined as:
This is a square, symmetric matrix where
d
ij
is the Euclidean dis-
tance between landmarks
i
and
j
. The form matrix for a given object
provides all the relevant information about the form of that object that
can be obtained from landmark coordinates.
As an illustration, we present a simple two-dimensional example.
We strongly recommend that the reader conduct these calculations and
draw the original triangle on a piece of graph paper. The distances
between landmarks can be obtained easily using a ruler.
Let the landmark coordinate matrix be This is a tri-
angle with vertices at (0,0), (1,0), and (0,1) for landmarks 1, 2, and 3,
respectively. The form matrix corresponding to this triangle is given by
the collection of all pair-wise distances in a matrix, namely,
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