The Dos Family of Globin-Related Sensors Using PAS Domains to Accommodate Haem Acting as the Active Site for Sensing External Signals - Advances in Microbial Physiology - page 325

domain protein 2 (NPAS2): Conversion from His119/Cys170 coordination to His119/
His171 coordination. Journal of Inorganic Biochemistry , 108 , 188-195.
Uchida, T., Sato, E., Sato, A., Sagami, I., Shimizu, T., & Kitagawa, T. (2005). CO-
dependent activity-controlling mechanism of heme-containing CO-sensor protein,
neuronal PAS domain protein 2. The Journal of Biological Chemistry , 280 , 21358-21368.
van Wilderen, L. J., Key, J. M., Van Stokkum, I. H., van Grondelle, R., & Groot, M. L.
(2009). Dynamics of carbon monoxide photodissociation in Bradyrhizobium japonicum
FixL probed by picosecond midinfrared spectroscopy. The Journal of Physical Chemistry.
B , 113 , 3292-3297.
Voordouw, G. (2002). Carbon monoxide cycling by Desulfovibrio vulgaris Hildenborough.
Journal of Bacteriology , 184 , 5903-5911.
Wan, X., Tuckerman, J. R., Saito, J. A., Freitas, T. A., Newhouse, J. S., Denery, J. R., et al.
(2009). Globins synthesize the second messenger bis-(3 0 -5 0 )-cyclic diguanosine mono-
phosphate in bacteria. Journal of Molecular Biology , 388 , 262-270.
Watts, K. J., Taylor, B. L., & Johnson, M. S. (2011). PAS/poly-HAMP signaling in Aer-2, a
soluble haem-based sensor. Molecular Microbiology , 79 , 686-699.
Williams, P. A., F ¨ l ¨ p, V., Garman, E. F., Saunders, N. F., Ferguson, S. J., & Hajdu, J.
(1997). Haem-ligand switching during catalysis in crystals of a nitrogen-cycle enzyme.
Nature , 389 , 406-412.
Winkler, W. C., Gonzalez, G., Wittenberg, J. B., Hille, R., Dakappagari, N., Jacob, A., et al.
(1996). Nonsteric factors dominate binding of nitric oxide, azide, imidazole, cyanide,
and fluoride to the rhizobial heme-based oxygen sensor FixL. Chemistry & Biology , 3 ,
841-850.
Yamada, S., Sugimoto, H., Kobayashi, M., Ohno, A., Nakamura, H., & Shiro, Y. (2009).
Structure of PAS-linked histidine kinase and the response regulator complex. Structure ,
17 , 1333-1344.
Yamamoto, K., Ishikawa, H., Takahashi, S., Ishimori, K., Morishima, I., Nakajima, H., et al.
(2001). Binding of CO at the Pro2 side is crucial for the activation of CO-sensing tran-
scriptional activator CooA. 1 H NMR spectroscopic studies. The Journal of Biological
Chemistry , 276 , 11473-11476.
Yeh, S. R., Couture, M., Ouellet, Y., Guertin, M., &Rousseau, D. L. (2000). A cooperative
oxygen binding hemoglobin from Mycobacterium tuberculosis. Stabilization of heme ligands
by a distal tyrosine residue. The Journal of Biological Chemistry , 275 , 1679-1684.
Yoshioka, S., Kobayashi, K., Yoshimura, H., Uchida, T., Kitagawa, T., & Aono, S. (2005).
Biophysical properties of a c-type heme in chemotaxis signal transducer protein DcrA.
Biochemistry , 44 , 15406-15413.
Yukl, E. T., Ioanoviciu, A., Nakano, M. M., Ortiz de Montellano, P. R., & Mo¨nne-
Loccoz, P. (2008). A distal tyrosine residue is required for ligand discrimination in DevS
from Mycobacterium tuberculosis . Biochemistry , 47 , 12532-12539.
Yukl, E. T., Ioanoviciu, A., Ortiz de Montellano, P. R., & Mo¨nne-Loccoz, P. (2007).
Interdomain interactions within the two-component heme-based sensor DevS from
Mycobacterium tuberculosis . Biochemistry , 46 , 9728-9736.
Yukl, E. T., Ioanoviciu, A., Sivaramakrishnan, S., Nakano, M. M., Ortiz de
Montellano, P. R., & Mo ¨ nne-Loccoz, P. (2011). Nitric oxide dioxygenation reaction
in DevS and the initial response to nitric oxide in Mycobacterium tuberculosis . Biochemistry ,
50 , 1023-1028.