Biology Reference
In-Depth Information
Amaratunga, D., & Cabrera, J. (2004). Exploration and analysis of DNA microarray
and protein array data. New York: John Wiley & Sons.
Bell-Pedersen, D., Cassone, V. M., Earnest, D. J., Golden, S. S., Hardin, P. E.,
Thomas, T. L., & Zoran, M. J. (2005). Circadian rhythms from multiple
oscillators: Lessons from diverse organisms. Nature Reviews Genetics, 6,
544-566.
Causton, H. D., Quackenbush, J., & Brazma, A. (2003). Microarray gene expression
data analysis: A beginner's guide. Malden, MA: Blackwell Publishing.
Ceriani, M. F., Hogenesch, J. B., Yanovsky, M., Panda, S., Straume, M., & Kay,
S. A. (2002). Genome-wide expression analysis in Drosophila reveals genes
controlling circadian behavior. Journal of Neuroscience, 22, 9305-9319.
Duffield, G. E. (2003). DNA microarray analyses of circadian timing: The
genomic basis of biological time. Journal of Neuroendocrinology, 15, 991-1002.
Edwards, K. D., Anderson, P. E., Hall, A., Salathia, N. S., Locke, J. C. W., Lynn,
J. R., Straume, M., Smith, J. Q., & Millar, A. J. (2006). Flowering locus C
mediates natural variation in the high-temperature response of the Arabadopsis
circadian clock. The Plant Cell, 18, 639-650.
Eisen, M. B., & Brown, P. O. (1999). DNA arrays for analysis of gene expression.
In Weissman, S. M., (Ed.), Methods in Enzymology (vol. 303, pp. 179-205). New
York: Academic Press.
Eisen, M. B., Spellman, P. T., Brown, P. O., & Botstein, D. (1998). Cluster analysis
and display of genome-wide expression patterns. Proceedings of the National
Academy of Sciences of the United States of America, 95, 14863-14868.
Everit, B., Landau, S., & Leese, M. (2001). Cluster analysis. London: Oxford
University Press.
Harmer, S. L., Hogenesch, J. B., Straume, M., Chang, H. S., Han, B., Zhu, T.,
Wang, X., Kreps, J. A., & Kay, S. A. (2000). Orchestrated transcription of key
pathways in Arabidopsis by the circadian clock. Science, 290, 2110-2113.
Krawetz, S. A., & Womble, D. D. (2003). Introduction to bioinformatics: A theoretical
and practical approach. Totowa, NJ: Humana Press.
Mormont, M. C., & Levi, F. (2003). Cancer chronotherapy: Principles,
applications, and perspectives. Cancer, 97, 155-169.
Panda, S., Antoch, M. P., Miller, B. H., Su, A. I., Schook, A. B., Straume, M.,
Schultz, P. G., Kay, S. A., Takahashi, J. S., & Hogenesch, J. B.
(2002). Coordinated transcription of key pathways in the mouse by the
circadian clock. Cell, 109, 307-320.
Reppert, S. M., & Weaver, D. R. (2002). Coordination of circadian timing in
mammals. Nature, 418, 935-941.
Richter, H. G., Torres-Farfan, C., Rojas-Garcia, P. P., Campino, C., Torrealba, F.,
& Seron-Ferre, M. (2004). The circadian timing system: Making sense of day/
night gene expression. Biology Research, 37, 11-28.
Straume, M. (2004). DNA microarray time series analysis: Automated statistical
assessment of circadian rhythms in gene expression patterning. In Brand, L.,
& Johnson, M. L., (Eds.), Methods in Enzymology (vol. 383, pp. 149-166). New
York: Academic Press.
INTERNET RESOURCES
Michael Eisen's site, with Cluster and Tree View programs and diffuse large B-cell
lymphoma (DLBCL) data available for download.
http://www.affymetrix.com
Home page of Affymetrix, Inc., with links to information about their product
designs, manufacturing processes, microarray hybridization, and description
of their GeneChip
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and other products.
