Biology Reference
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Letunic, I., Copley, R. R., Schmidt, S., Ciccarelli, F. D., Doerks, T., Schultz, J., Ponting, C. P., and Bork, P.
(2004). SMART 4.0: towards genomic data integration. Nucleic Acids Res. 32 , D142-D144.
Lewis, B. P., Burge, C. B., and Bartel, D. P. (2005). Conserved seed pairing, often flanked by adenosines,
indicates that thousands of human genes are microRNA targets. Cell 120 , 15-20.
Li, J. J., and Herskowitz, I. (1993). Isolation of the ORC6, a component of the yeast origin recognition
complex by a one-hybrid system. Science 262 , 1870-1874.
Li, S., Armstrong, C. M., Bertin, N., Ge, H., Milstein, S., Boxem, M., Vidalain, P. -O., Han, J. -D. J.,
Chesneau,A.,Hao,T.,Goldberg,D.S.,Li,N.,Martinez,M.,Rual,J.-F.,Lamesch,P.,Xu,L.,
Tewari,M.,Wong,S.L.,Zhang,L.V.,Berriz,G.F.,Jacotot,L.,Vaglio,P.,Reboul,J.,Hirozane-
Kishikawa, T., Li, Q., Gabel, H. W., Elewa, A., Bauemgartner, B., Rose, D. J., Yu, H., Bosak, S.,
Sequerra, R., Fraser, A., Mango, S. E., Saxton, W. M., Strome, S., van den Heuvel, S., Piano, F.,
Vandenhaute, J., Sardet, C., Gerstein, M., Doucette-Stam, L., Gunsalus, K., Harper, J. W., Cusick,
M. E., Roth, F. P., Hill, D., and Vidal, M. (2004). A map of the interactome network of the metazoan
C. elegans. Science 303 , 540-543.
Li, X. Y., MacArthur, S., Bourgon, R., Nix, D., Pollard, D. A., Iyer, V. N., Hechmer, A., Simirenko, L.,
Stapleton, M., Luengo Hendriks, C. L., Chu, H. C., Ogawa, N., Inwood, W., Sementchenko, V., Beaton,
A., Weiszmann, R., Celniker, S. E., Knowles, D. W., Gingeras, T. R., Speed, T. P., Eisen, M. B., and
Biggin, M. D. (2008). Transcription factors bind thousands of active an inactive regions in the
Drosophila blastoderm. PLoS Biol. 6 , e27.
Lim, L. P., Lau, N. C., Weinstein, E. G., Abdelhakim, A., Yekta, S., Rhoades, M. W., Burge, C. B., and
Bartel, D. P. (2003). The microRNAs of Caenorhabditis elegans. Genes Dev. 17 , 991-1008.
Mangone, M., Macmenamin, P., Zegar, C., Piano, F., and Gunsalus, K. C. (2008). UTRome.org: a platform
for 3 0 UTR biology in C. elegans. Nucleic Acids Res. 36 , D57-D62.
Mangone, M., Manoharan, A. P., Thierry-Mieg, D., Thierry-Mieg, J., Han, T., Mackowiak, S., Mis, E.,
Zegar, C., Gutwein, M. R., Khivansara, V., Attie, O., Chen, K., Salehi-Ashtiani, K., Vidal, M., Harkins,
T. T., Bouffard, P., Suzuki, Y., Sugano, S., Kohara, Y., Rajewsky, N., Piano, F., Gunsalus, K. C., and Kim,
J. K. (2010). The landscape of C. elegans 3 0 UTRs. Science 329 , 432-435.
Martinez, N. J., Ow, M. C., Barrasa, M. I., Hammell, M., Sequerra, R., Doucette-Stamm, L., Roth, F. P.,
Ambros, V., and Walhout, A. J. M. (2008a). A C. elegans genome-scale microRNA network contains
composite feedback motifs with high flux capacity. Genes Dev. 22 , 2535-2549.
Martinez, N. J., Ow, M. C., Reece-Hoyes, J., Ambros, V., and Walhout, A. J. (2008b). Genome-scale
spatiotemporal analysis of Caenorhabditis elegans microRNA promoter activity. Genome Res. 18 ,
2005-2015.
Mukhopadhyay, A., Deplancke, B., Walhout, A. J., and Tissenbaum, H. A. (2008). Chromatin immuno-
precipitation (ChIP) coupled to detection by quantitative real-time PCR to study transcription factor
binding to DNA in Caenorhabditis elegans. Nat. Protoc. 3 , 698-709.
Mulder, N. J., Apweiler, R., Attwood, T. K., Bairoch, A., Barrell, D., Bateman, A., Binns, D., Biswas, M.,
Bradley, P., Bork, P., Bucher, P., Copley, R. R., Courcelle, E., Das, U., Durbin, R., Falquet, L.,
Fleischmann, W., Griffiths-Jones, S., Haft, D., Harte, N., Hulo, N., Kahn, D., Kanapin, A.,
Krestyaninova, M., Lopez, R., Letunic, I., Lonsdale, D., Silventoinen, V., Orchard, S. E., Pagni, M.,
Peyruc, D., Ponting, C. P., Selengut, J. D., Servant, F., Sigrist, C. J., Vaughan, R., and Zdobnov, E. M.
(2003). The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res.
31 , 315-318.
Oh, S. W., Mukhopadhyay, A., Dixit, B. L., Raha, T., Green, M. R., and Tissenbaum, H. A. (2006).
Identification of direct targets of DAF-16 controlling longevity, metabolism and diapause by chromatin
immunoprecipitation. Nat. Genet. 38 , 251-257.
Ow, M. C., Martinez, N. J., Olsen, P., Silverman, S., Barrasa, M. I., Conradt, B., Walhout, A. J. M., and
Ambros, V. R. (2008). The FLYWCH transcription factors FLH-1, FLH-2 and FLH-3 repress embry-
onic expression of microRNA genes in C. elegans. Genes Dev. 22 , 2520-2534.
Pagano, J. M., Farley, B. M., Essien, K. I., and Ryder, S. P. (2009). RNA recognition by the embryonic cell
fate determinant and germline totipotency factor MEX-3. Proc. Natl Acad. Sci. U. S. A. 106 ,
20252-20257.
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