Biology Reference
In-Depth Information
Farrer, T., Roller, A. B., Kent, W. J., and Zahler, A. M. (2002). Analysis of the role of Caenorhabditis
elegans GC-AG introns in regulated splicing. Nucleic Acids Res.
30
, 3360-3367.
Ferguson, K. C., Heid, P. J., and Rothman, J. H. (1996). The SL1 trans-spliced leader RNA performs an
essential embryonic function in Caenorhabditis elegans that can also be supplied by SL2 RNA. Genes
Dev.
10
, 1543-1556.
Ferguson, K. C., and Rothman, J. H. (1999). Alterations in the conserved SL1 trans-spliced leader of
Caenorhabditis elegans demonstrate flexibility in length and sequence requirements in vivo. Mol. Cell
Biol.
19
, 1892-1900.
Fields, C. (1990). Information content of Caenorhabditis elegans splice site sequences varies with intron
length. Nucleic Acids Res.
18
, 1509-1512.
Fitzgerald, M., and Shenk, T. (1981). The sequence 5
0
-AAUAAA-3
0
forms parts of the recognition site for
polyadenylation of late SV40 mRNAs. Cell
24
, 251-260.
Ganot, P., Kalles
ΓΈ
e, T., Reinhardt, R., Chourrout, D., and Tompson, E. M. (2004). Spliced-leader RNA
trans splicing in a chordate, Oikopleura dioica, with a compact genome. Mol. Cell Biol.
24
, 7795
-
7805.
Glover-Cutter, K., Kim, S., Espinosa, J., and Bentley, D. L. (2008). RNA polymerase II pauses and
associates with pre-mRNA processing factors at both ends of genes. Nat. Struct. Mol. Biol.
15
, 71-78.
Goodall, G. J., and Filipowicz, W. (1989). The AU-rich sequences present in the introns of plant nuclear
pre-mRNAs are required for splicing. Cell
58
, 473-483.
Graber, J. H., Salisbury, J., Hutchins, L. N., and Blumenthal, T. (2007). C. elegans sequences that control
trans-splicing and operon pre-mRNA processing. RNA
13
, 1409-1426.
Guiliano, D. B., and Blaxter, M. L. (2006). Operon conservation and the evolution of trans-splicing in the
phylum Nematoda. PLoS Genet.
2
, e198.
Haenni, S., Sharpe, H. E., Gravato Nobre, M., Zechner, K., Browne, C., Hodgkin, J., and Furger, A. (2009).
Regulation of transcription termination in the nematode Caenorhabditis elegans. Nucleic Acids Res.
37
,
6723-6736.
Hajarnavis, A., Korf, I., and Durbin, R. (2004). A probabilistic model of 3
0
end formation in
Caenorhabditis elegans. Nucleic Acids Res.
32
, 3392-3399.
Hannon, G. J., Maroney, P. A., Ayers, D. G., Shambaugh, J. D., and Nilsen, T. W. (1990). Transcription of a
nematode trans-spliced leader RNA requires internal elements for both initiation and 3
0
end-formation.
EMBO J.
9
, 1915-1921.
Hannon, G. J., Maroney, P. A., and Nilsen, T. W. (1991). U small nuclear ribonucleoprotein requirements
for nematode cis- and trans-splicing in vitro. J. Biol. Chem.
266
, 22792-22795.
Hannon, G. J., Maroney, P. A., Yu, Y. T., Hannon, G. E., and Nilsen, T. W. (1992). Interaction of U6 snRNA
with a sequence required for function of the nematode SL RNA in trans-splicing. Science
258
, 1775-1780.
Hiller, M., Huse, K., Szafranski, K., Jahn, N., Hampe, J., Schreiber, S., Backofen, R., and Platzer, M.
(2004). Widespread occurrence of alternative splicing at NAGNAG acceptors contributes to proteome
plasticity. Nat. Genet.
36
, 1255-1257.
Hiller, M., Nikolajewa, S., Huse, K., Szafranski, K., Rosenstiel, P., Schuster, S., Backofen, R., and Platzer,
M. (2007). TassDB: A database of alternative tandem splice sites. Nucleic Acids Res.
35
, D188-D192.
Hillier, L. W., Reinke, V., Green, P., Hirst, M., Marra, M. A., and Waterston, R. H. (2009). Massively
parallel sequencing of the polyadenylated transcriptome of C. elegans. Genome Res.
19
, 657-666.
Hollins, C., Zorio, D. A. R., MacMorris, M., and Blumenthal, T. (2005). U2AF binding selects for the high
conservation of the C. elegans 3
0
splice site. RNA
11
, 248-253.
Huang, P., Pleasance, E. D., Maydan, J. S., Hunt-Newbury, R., O
'
Neil, N. J., Mah, A., Baillie, D. L., Marra,
M. A., Moerman, D. G., and Jones, S. J. M. (2007). Identification and analysis of internal promoters in
Caenorhabditis elegans operons. Genome Res.
17
, 1478-1485.
Huang, T., Kuersten, S., Deshpande, A. M., Spieth, J., MacMorris, M., and Blumenthal, T. (2001).
Intercistronic region required for polycistronic pre-mRNA processing in Caenorhabditis elegans.
Mol. Cell Biol.
21
, 1111-1120.
Huang, T., Vilardell, J., and Query, C. C. (2002). Pre-spliceosome formation in S. pombe requires a stable
complex of SF1-U2AF(59)-U2AF(23). EMBO J.
21
, 5516-5526.
Search WWH ::
Custom Search