Agriculture Reference
In-Depth Information
Eichorst, S. A., C. R. Kuske, and T. M. Schmidt. 2011. Influence of plant polymers on
the distribution and cultivation of bacteria in the phylum Acidobacteria. Applied and
Environmental Microbiology 77:586-596.
Fargione, J., D. Tilman, R. Dybzinski, J. H. R. Lambers, C. Clark, W. S. Harpole, J. M. H. Knops,
P. B. Reich, and M. Loreau. 2007. From selection to complementarity: shifts in the causes of
biodiversity-productivity relationships in a long-term biodiversity experiment. Proceedings
of the Royal Society B: Biological Sciences 274:871-876.
Feinstein, L. M., W. J. Sul, and C. B. Blackwood. 2009. Assessment of bias associated
with incomplete extraction of microbial DNA from soil. Applied and Environmental
Microbiology 75:5428-5433.
Gans, J., M. Wolinsky, and J. M. Dunbar. 2005. Computational improvements reveal great
bacterial diversity and high metal toxicity in soil. Science 309:1387-1390.
Gelfand, I., and G. P. Robertson. 2015. Mitigation of greenhouse gas emissions in agricul-
tural ecosystems. Pages 310-339 in S. K. Hamilton, J. E. Doll, and G. P. Robertson,
editors. The ecology of agricultural Landscapes: long-term research on the path to sus-
tainability. Oxford University Press, New York, New York, USA.
Gomez-Alvarez, V., T. K. Teal, and T. M. Schmidt. 2009. Systematic artifacts in metage-
nomes from complex microbial communities. The ISME Journal 3:1314-1317.
Groffman, P. M., and P. J. Bohlen. 1999. Soil and sediment biodiversity. BioScience
49:139-148.
Hanson, P. J., N. T. Edwards, C. T. Garten, and J. A. Andrews. 2000. Separating root and
soil microbial contributions to soil respiration: a review of methods and observations.
Biogeochemistry 48:115-146.
Huizinga, K. M. 2006. The diversity of dissimilatory nitrate reducers in an agroecosystem.
Dissertation, Michigan State University, East Lansing, Michigan, USA.
IPCC (Intergovernmental Panel on Climate Change). 2007. Climate change 2007: synthesis
report. Contribution of Working Groups I, II and III to the Fourth Assessment Report of
the IPCC [Core Writing Team, R. K. Pachauri, and A. Resinger, editors]. IPCC, Geneva,
Switzerland.
Janssen, P. H. 2006. Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and
16S rRNA genes. Applied and Environmental Microbiology 72:1719-1728.
Janssen, P. H., P. S. Yates, B. E. Grinton, P. M. Taylor, and M. Sait. 2002. Improved cul-
turability of soil bacteria and isolation in pure culture of novel members of the divi-
sions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia. Applied and
Environmental Microbiology 68:2391-2396.
Jones, S. E., and J. T. Lennon. 2010. Dormancy contributes to the maintenance of microbial
diversity. Proceedings of the National Academy of Sciences USA 107:5881-5886.
Klappenbach, J., J. M. Dunbar, and T. M. Schmidt. 2000. rRNA gene copy number
reflects ecological strategies in bacteria. Applied and Environmental Microbiology
66:1328-1333.
Lee, Z. M.-P., C. Bussema, III, and T. M. Schmidt. 2009. rrnDB: documenting the number of
rRNA and tRNA genes in bacteria and archaea. Nucleic Acids Research 37:D489-D493.
Lennon, J. T., and S. E. Jones. 2011. Microbial seed banks: the ecological and evolutionary
implications of dormancy. Nature Reviews: Microbiology 9:119-130.
Levine, U., T. K. Teal, G. P. Robertson, and T. M. Schmidt. 2011. Agriculture's impact on
microbial diversity and associated fluxes of carbon dioxide and methane. The ISME
Journal 5:1683-1691.
Lynch, M. D., and R. G. Thorn. 2006. Diversity of basidiomycetes in Michigan agricultural
soils. Applied and Environmental Microbiology 72:7050-7056.
