Current Analytical Methods of DNA Microarray Data - DNA Microarray Technology and Data Analysis in Cancer Research - page 32

Table 3.3. Cumulative number of significant calls using RMA-processed data.

<1e−04 <0.001 <0.01 <0.025 <0.05 <0.1 <1

Mut_A vs. B6
p -value 6 56 394 828 1446 2590 35557

q -value 0 0 0 0 1 1 35557

Vector vs. B6
p -value 37 238 1507 2556 3789 5890 35557

q -value 0 0 0 1 5 80 35557

Mut_A vs. Vector
p -value 32 164 1058 2055 3212 5090 35557

q -value 0 0 0 0 0 33 35557

Table 3.4. Cumulative number of significant calls using iterPLIER-processed

data.

<1e−04 <0.001 <0.01 <0.025 <0.05 <0.1 <1

Mut_A vs. B6
p -value 20 67 340 691 1273 2351 35557

q -value 0 0 0 1 1 1 35557

Vector vs. B6
p -value 67 293 1507 2741 4197 6445 35557

q -value 0 0 5 28 84 346 35557

Mut_A vs. Vector
p -value 45 201 1123 2080 3354 5670 35557

q -value 0 0 0 6 32 110 35557

3.4 . Statistical Analysis

3.4.1. Analysis of variance ( ANOVA) model

The following ANOVA model was used:

y ∼ Strain.