Biology Reference
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Fig. 3.9. Average MA plot of iterPLIER-processed data for sample groups Mut_A
versus B6 (top left), Mut_A versus Vector (top right), and Vector versus B6 (bottom
center).
3.3.3. Normalized intensities across arrays
The log 2 -transformed intensities were quantile-normalized. Quantile-
normalization normalizes data based on the magnitude of the measures
of probe intensities. The method is employed to remove systematic
effects, and to bring the data from different microarrays onto a common
scale (Figs. 3.4 and 3.5).
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