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Iwasaki, A., and Medzhitov, R. (2004). Toll-like receptor control of the adaptive immune
responses. Nat. Immunol. 5:987-995.
Izmailova, E., Bertley, F.M., Huang, Q., Makori, N., Miller, C.J., Young, R.A., and Aldovini, A.
(2003) HIV-1 Tat reprograms immature dendritic cells to express chemoattractants for
activated T cells and macrophages. Nat. Med. 9:191-197.
Jego, G., Palucka, A.K., Blanck, J.P., Chalouni, C., Pascual, V., and Banchereau, J. (2003)
Plasmacytoid dendritic cells induce plasma cell differentiation through type I interferon
and interleukin 6. Immunity 19:225-234.
Kellam, P., Liu, X., Martin, N., Orengo, C., Swift, S., and Tucker, A. (2001) A framework for
modelling short, high-dimensional multivariate time series. Preliminary results in virus gene
expression data analysis. In:
Advances in Intelligent Data Analysis: 4th International
Conference, IDA 2001.
Lecture Notes in Computer Science 2189
. Springer, Berlin, pp. 218-227.
Kitano, H. (2004) Biological robustness. Nat. Rev. Genet. 5:826-837.
Langenkamp, A., Messi, M., Lanzavecchia, A., and Sallusto, F. (2000) Kinetics of dendritic
cell activation: Impact on priming of TH1, TH2 and nonpolarized T cells. Nat. Immunol.
1:311-316.
Maekawa, Y., Tsukumo, S., Chiba, S., Hirai, H., Hayashi, Y., Okada, H., Kishihara, K., and
Yasutomo, K. (2003) Delta1-Notch3 interactions bias the functional differentiation of
activated CD4+ T cells. Immunity 19:549-559.
Mempel, T.R., Henrickson, S.E., and Von Andrian, U.H. (2004) T-cell priming by dendritic
cells in lymph nodes occurs in three distinct phases. Nature 427:154-159.
O'Garra, A. (1998) Cytokines induce the development of functionally heterogeneous T helper
cell subsets. Immunity 8:275-283.
Poeck, H., Wagner, M., Battiany, J., Rothenfusser, S., Wellisch, D., Hornung, V., Jahrsdorfer, B.,
Giese, T., Endres, S., and Hartmann, G. (2004). Plasmacytoid dendritic cells, antigen, and
CpG-C license human B cells for plasma cell differentiation and immunoglobulin
production in the absence of T-cell help. Blood 103:3058-3064.
Ryan, C.A., Gildea, L.A., Hulette, B.C., Dearman, R.J., Kimber, I., and Gerberick, G.F.
(2004) Gene expression changes in peripheral blood-derived dendritic cells following
exposure to a contact allergen. Toxicol. Lett. 150:301-316.
Shigematsu, H., Reizis, B., Iwasaki, H., Mizuno, S., Hu, D., Traver, D., Leder, P., Sakaguchi, N.,
Akashi, K. (2004). Plasmacytoid dendritic cells activate lymphoid-specific genetic
programs irrespective of their cellular origin. Immunity 21:43-53.
Shortman, K., and Liu, Y.J. (2002) Mouse and human dendritic cell subtypes. Nat. Rev.
Immunol. 2:151-161.
Suciu-Foca Cortesini, N., Piazza, F., Ho, E., Ciubotariu, R., LeMaoult, J., Dalla-Favera, R.,
and Cortesini, R. (2001) Distinct mRNA microarray profiles of tolerogenic dendritic cells.
Hum. Immunol. 62:1065-1072.
Xie, H., Ye, M., Feng, R., and Graf, T. (2004). Stepwise reprogramming of B cells into
macrophages. Cell 117:663-676.
Yan, W., Lee, H., Yi, E.C., Reiss, D., Shannon, P., Kwieciszewski, B.K., Coito, C., Li, X.J., Keller,
A., Eng. J., Galitski, T., Goodlett, D.R., Aebersold, R., and Katze, M.G. (2004) System-based
proteomic analysis of the interferon response in human liver cells. Genome Biol. 5:R54.
Yates, A., Callard, R., and Stark, J. (2004) Combining cytokine signalling with T-bet and
GATA-3 regulation in Th1 and Th2 differentiation: A model for cellular decision-making.
J. Theor. Biol. 231:181-196.
Zhou, X., Kao, M.C., and Wong, W.H. (2002) Transitive functional annotation by shortest-
path analysis of gene expression data. Proc. Natl. Acad. Sci. USA 99:12783-12788.
Zuniga, E.I., McGavern, D.B., Pruneda-Paz, J.L., Teng, C., and Oldstone, M.B. (2004) Bone
marrow plasmacytoid dendritic cells can differentiate into myeloid dendritic cells upon
virus infection. Nat. Immunol. 5:1227-1234.
