Biomedical Engineering Reference
In-Depth Information
Table 3.2
RMSD and percentage of sequence identity of transmembrane domains of GPCRs with known
3D structures
2lnlA
4grvA
3vw7A 3uonA
4ea3A
4ej4A
4djhA
4dajA
3v2yA
3rzeA
1u19A
2rh1A
2vt4A
3emlA
4dklA
3oduA
3pblA
2lnlA
-
30.1
32.7
26.0
39.3
36.2
33.7
23.0
22.4
22.4
23.0
28.1
32.1
26.5
36.2
43.4
29.1
4grvA
6.43
-
21.9
24.5
31.1
28.1
32.1
24.5
23.0
21.4
23.0
20.9
24.0
22.4
25.5
27.6
27.6
3vw7A
6.21
2.50
-
25.5
30.6
29.6
28.6
23.0
16.8
24.0
17.9
23.5
23.0
21.4
28.6
28.1
24.0
3uonA
5.92
2.92
3.30
-
27.6
28.1
30.6
70.4
27.6
35.7
23.0
30.6
30.1
26.0
29.6
24.0
31.1
4ea3A
5.58
2.61
2.44
2.16
-
63.3
62.2
25.5
21.9
26.5
22.4
28.1
29.1
26.0
62.8
34.2
30.6
4ej4A
5.89
2.54
2.37
2.24
0.98
-
72.4
27.6
21.4
30.1
24.0
30.1
29.1
29.1
73.5
29.6
30.6
4djhA
5.95
2.53
2.72
2.37
1.41
1.45
-
28.1
21.9
31.1
21.9
30.6
31.1
29.1
71.9
30.6
27.6
4dajA
5.84
2.70
3.13
1.32
2.33
2.42
2.43
-
26.5
38.3
19.9
36.7
34.2
29.6
28.6
25.5
30.6
3v2yA
5.63
3.09
3.16
2.27
2.50
2.66
2.79
2.29
-
25.0
21.4
27.0
28.6
29.6
20.4
21.9
26.5
3rzeA
5.71
2.31
2.61
1.65
1.85
1.87
1.98
1.59
2.25
-
20.4
35.7
35.7
33.2
29.6
24.5
34.2
1u19A
5.76
2.77
2.52
2.37
2.04
2.16
2.55
2.46
2.60
2.03
-
22.4
21.4
23.0
25.5
22.4
27.6
2rh1A
6.07
2.41
2.83
1.38
2.09
2.13
2.16
1.53
2.14
1.48
2.04
-
69.4
34.2
29.6
25.5
37.8
2vt4A
6.54
2.54
3.32
2.81
2.75
2.83
2.40
2.64
3.23
2.12
2.91
2.30
-
35.7
28.1
25.0
40.8
3emlA
5.79
2.51
3.10
2.23
2.23
2.39
2.59
2.32
1.98
2.13
2.44
2.08
2.86
-
28.1
22.4
31.6
4dklA
5.57
2.82
2.70
2.32
0.89
1.09
1.46
2.50
2.62
1.99
2.18
2.31
2.95
2.43
-
33.2
31.1
3oduA
5.65
3.05
2.91
2.77
1.89
1.91
2.40
2.88
2.88
2.33
2.47
2.78
3.35
2.75
1.76
-
27.0
3pblA
5.70
2.12
2.62
1.66
1.66
1.78
1.91
1.93
1.98
1.40
1.77
1.31
1.63
1.56
1.81
2.12
-
Lower triangular matrix: TMH RMSD (Å), Upper triangular matrix: TMH % of sequence identity
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