Environmental Engineering Reference
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substrates produced from DOM and OM either photolytically or biologi-
cally can enhance biological productivity in waters (Mostofa et al. 2009a ;
Bertilsson and Tranvik 1998 , 2000 ; Vähätalo and Järvinen 2007 ; Lovley et
al. 1996 ; Komissarov 2003 ; Tranvik 1992 ; Norrman et al. 1995 ; Wetzel et
al. 1995 ). Production of nutrients and DIC through photoinduced and micro-
bial degradation of DOM or POM can control the food-chains for micro-
organisms (Mostofa et al. 2009a ; Miller and Zepp 1995 ; Ma and Green
2004 ; Tranvik 1992 ; Salonen et al. 1992 ; Kirchman et al. 1995 ; Wheeler
et al. 1997 ; Guildford and Hecky 2000 ; Rosenstock et al. 2005 ). The bio-
geochemical functions of microbial processes are discussed in details in
“Photoinduced and Microbial Degradation of Dissolved Organic Matter in
Natural Waters” .
(3) Optical (or physical) functions of DOM: a fraction of DOM is named as
either colored and chromophoric dissolved organic matter (CDOM) based on
the absorption of ultraviolet (UV) and photosynthetically available radiation
(PAR), or fluorescent DOM (FDOM) based on the emission of fluorescence
photons after radiation absorption. DOM generally controls the downward
irradiance flux through the water column of UV-B (280-320 nm), UV-A
(320-400 nm), total UV (280-400 nm) as well as photosynthetically avail-
able radiation (PAR, 400-700 nm) (Kirk 1976 ; Morris et al. 1995 ; Siegel and
Michaels 1996 ; Morris and Hargreaves 1997 ; Tranvik 1998 ; Bertilsson and
Tranvik 2000 ; Laurion et al. 2000 ; Markager and Vincent 2000 ; Huovinen
et al. 2003 ; Sommaruga and Augustin 2006 ; Hayakawa and Sugiyama
2008 ; Effler et al. 2010 ). DOM is responsible for water color, water trans-
parency, occurrence of the euphotic zone and thermal stratification in the
surface waters of lakes and oceans because it affects (decreases) the pen-
etration of solar radiation (Laurion et al. 2000 ; Effler et al. 2010 ; Hudson et
al. 2003 ; Eloranta 1978 ; Jones and Arvola 1984 ; Howell and Pollock 1986 ;
Perez-Fuentetaja et al. 1999 ; Snicins and Gunn 2000 ; Watts et al. 2001 ;
Mostofa et al. 2005a ). Biogeochemical functions of CDOM and FDOM are
discussed in detail in the respective chapters (see chapters Colored and
Chromophoric Dissolved Organic Matter (CDOM) in Natural Waters ” and
Fluorescent Dissolved Organic Matter in Natural Waters ”).
(4) Cycling of nutrients (NH 4
, and PO 4 3 ) by DOM and POM.
Nutrients are produced by degradation of DOM and typically derive from
dissolved organic nitrogen (DON) and dissolved organic phosphorus
(DOP) in DOM molecular structure (Bronk 2002 ; Zhang et al. 2004 , 2008 ;
Kim et al. 2006 ; Vähätalo and Järvinen 2007 ; Li et al. 2008 ). Nutrients are
mostly released during the photoinduced and microbial respiration (or
assimilation) of POM (e.g. algae or phytoplankton biomass), as shown
by in situ experiments conducted under light and dark incubations (Kim et
al. 2006 ; Li et al. 2008 ; Yamashita and Jaffé 2008 ; Carrillo et al. 2002 ;
Kopá
+
+
, NO 3
č
ek et al. 2004 ; Fu et al. 2005 ; Mostofa KMG et al. unpublished data).
NO 3
and NO 2
can be produced by oxidation of ammonia in nitrification
+
+ 2H + + H 2 O) and of DON in lake waters (Ma and
(NH 4
+ 2O 2 NO 3
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