Agriculture Reference
In-Depth Information
from four triticeae genomes. Plant Physiol. 135:459-
470.
Guyot, R., N. Yahiaoui, C. Feuillet, and B. Keller. 2004.
In
silico
comparative analysis reveals a mosaic conservation of
genes within a novel colinear region in wheat chromosomes
1AS and rice chromosome 5S. Funct. Integr. Genomics
4:47-58.
Han, F., A. Kilian, J.P. Chen, D. Kudrna, B. Steffenson, K.
Yamamoto, T. Matsumoto, T. Sasaki, and A. Kleinhofs.
1999. Sequence analysis of a rice BAC covering the synten-
ous barley
Rpg1
region. Genome 42:1071-1076.
Harberd, N.P., R.B. Flavell, and R.D. Thompson. 1987.
Identifi cation of a transposon-like insertion in a
Glu-1
allele of wheat. Mol. Gen. Genet. 209:326-332.
Hart, G.E., R.A. McIntosh, and M.D. Gale. 1993. Linkage
maps of
Triticum aestivum
(hexaploid wheat, 2
n
= 42,
Genomes A, B & D) and
T.tauschii
(2
n
the
Triticum/Aegilops
complex and the evolutionary history
of polyploid wheat. Proc. Natl. Acad. Sci. USA
99:8133-8138.
Ilic, K., P.J. SanMiguel, and J.L. Bennetzen. 2003. A complex
history of rearrangement in an orthologous region of the
maize, sorghum, and rice genomes. Proc. Natl. Acad. Sci.
USA 100:12265-12270.
International Rice Genome Sequencing Project. 2005. The
map-based sequence of the rice genome. Nature
436:793-800.
Isidore, E., B. Scherrer, A. Bellec, K. Budin, P. Faivre-
Rampant, R. Waugh, B. Keller, M. Caboche, C. Feuillet,
and B. Chalhoub. 2005. Direct targeting and rapid isola-
tion of BAC clones spanning a defi ned chromosome region.
Funct. Integr. Genomics 5:97-103.
Jaccoud, D., K. Peng, D. Feinstein, and A. Kilian. 2001.
Diversity arrays: A solid state technology for sequence
information independent genotypin. Nucleic Acids Res.
29:e25-31.
Janda, J., J. Bartoš, J.
ˇ
afáˇ, M. Kubaláková, M. Valárik, J.
ˇ
íhalíková, H.
ˇ
imková, M. Caboche, P. Sourdille, M.
Bernard, B. Chalhoub, and J. Doleˇel. 2004. Construction
of a subgenomic BAC library specifi c for chromosomes
1D, 4D and 6D of hexaploid wheat. Theor. Appl. Genet.
109:1337-1345.
Janda, J., J.
ˇ
afáˇ, M. Kubaláková, J. Bartoš, P. Kováˇová, P.
Suchánková, S. Pateyron, J.
ˇ
íhalíková, P. Sourdille, H.
ˇ
imková, P. Faivre-Rampant, E. Hˇibová, M. Bernard, A.
Lukaszewski, J. Doleˇel, and B. Chalhoub. 2006. Advanced
resources for plant genomics: A BAC library specifi c for
the short arm of wheat chromosome 1B. Plant J.
47:977-986.
Jia, J., T.E. Miller, S.M. Reader, K.M. Devos, and M.D.
Gale. 1996. RFLP-based maps of the homoeologous group
6 chromosomes of wheat and their application in the
tagging of
Pm12
, a powdery mildew resistance gene trans-
ferred from
Aegilops speltoides
to wheat. Theor. Appl.
Genet. 92:559-565.
Jiang, J.M., and B.S. Gill. 2006. Current status and the future
of fl uorescence
in situ
hybridization (FISH) in plant
genome research. Genome 49:1057-1068.
Jones, H.D. 2005. Wheat transformation: Current technology
and applications to grain development and composition.
J. Cereal Sci. 41:137-147.
Jones, E.S., N.L. Mahoney, M.D. Hayward, I.P. Armstead,
J.G. Jones, M.O. Humphreys, I.P. King, T. Kishida, T.
Yamada, F. Balfourier, G. Charmet, and J.W. Forster.
2002. An enhanced molecular marker based genetic map
of perennial ryegrass (
Lolium perenne
) reveals comparative
relationships with other
Poaceae
genomes. Genome
45:282-295.
Klein, P.E., R.R. Klein, S.W. Cartinhour, P.E. Ulanch, J.
Dong, J.A. Obert, D.T. Morishige, S.D. Schlueter, K.L.
Childs, M. Ale, and J.E. Mullet. 2000. A high-throughput
AFLP-based method for constructing integrated genetic
and physical maps: Progress towards a sorghum genome
map. Genome Res. 10:789-807.
Kofl er, R., C. Schlotterer, and T. Lelley. 2007. SciRoKo: A
new tool for whole genome microsatellite search and inves-
tigation. Bioinformatics 23:1683-1685.
14, Genome D).
p. 6.204-6.219.
In
S.J. O'Brien (ed.) Genetic maps: Locus
maps of complex genomes. Cold Spring Harbor Labora-
tory Press, Woodbury, NY.
Hartl, L., H. Weiss, F.J. Zeller, and A. Jahoor. 1993. Use
of RFLP markers for the identifi cation of alleles of the
Pm3
locus conferring powdery mildew resistance in
wheat (
Triticum aestivum
L). Theor. Appl. Genet. 86:959-
963.
Hiebert, C.W., J.B. Thomas, D.J. Somers, B.D. McCallum,
and S.L. Fox. 2007. Microsatellite mapping of adult-plant
leaf rust resistance gene
Lr22a
in wheat. Theor. Appl.
Genet. 115:877-884.
Hossain, K.G., V. Kalavacharla, G.R. Lazo, et al. 2004.
A chromosome bin map of 2148 expressed sequence
tag loci of wheat homoeologous group 7. Genetics
168:687-699.
Houde, M., M. Belcaid, F. Ouellet, J. Danyluk, A.F. Monroy,
A. Dryanova, P. Gulick, A. Bergeron, A. Laroche, M.G.
Links, L. MacCarthy, W.L. Crosby, and F. Sarhan. 2006.
Wheat EST resources for functional genomics of abiotic
stress. BMC Genomics 7:149 [Online]. Available at http://
www.pubmedcentral.nih.gov/articlerender.
fcgi?artid=1539019 (verifi ed 8 May 2008).
Houshmand, S., R.E. Knox, F.R. Clarke, and J.M. Clarke.
2007. Microsatellite markers fl anking a stem solidness
gene on chromosome 3BL in durum wheat. Mol. Breed.
20:261-270.
Huang, L., S.A. Brooks, W. Li, J.P. Fellers, H. Trick, and
B.S. Gill. 2003. Map-based cloning of a leaf rust resistance
gene
Lr21
from the large polyploid genome of bread wheat.
Genetics 164:655-664.
Huang, L., and B.S. Gill. 2001. An RGA-like marker detects
all known
Lr21
leaf rust resistance gene family members
in
Aegilops tauschii
and wheat. Theor. Appl. Genet.
103:1007-1013.
Huang, S., A. Sirikhachornkit, J.D. Faris, X. Su, B.S. Gill,
R. Haselkorn, and P. Gornicki. 2002a. Phylogenetic analy-
sis of the acetyl-CoA carboxylase and 3-phosphoglycerate
kinase loci in wheat and other grasses. Plant Mol. Biol.
48:805-820.
Huang, S., A. Sirikhachornkit, X. Su, J. Faris, B.S. Gill, R.
Haselkorn, and P. Gornicki. 2002b. Genes encoding plastid
acetyl-CoA carboxylase and 3-phosphoglycerate kinase of
=
