Chemistry Reference
In-Depth Information
Ben-Naim, A. 2007a. A critique of some recent suggestions to correct the Kirkwood-Buff
integrals.
Journal of Physical Chemistry B.
111, 2896.
Ben-Naim, A. 2007b. Reply to “Comment on 'A critique of some recent suggestions to correct
the Kirkwood-Buff integrals.'”
Journal of Physical Chemistry B.
111, 3072.
Ben-Naim, A. 2008. Comment on “The Kirkwood-Buff theory of solutions and the local com-
position of liquid mixtures.”
Journal of Physical Chemistry B.
112, 5874.
Ben- Naim, A. 2009.
Molecular Theory of Water and Aqueous Solutions. Part 1: Understanding
Water
. Singapore: World Scientific Publishing Co.
Ben- Naim, A. 2011.
Molecular Theory of Water and Aqueous Solutions. Part 2: The Role of
Water in Protein Folding, Self-Assembly and Molecular Recognition
. Singapore: World
Scientific Publishing Co.
Ben-Naim, A. and A. Santos. 2009. Local and global properties of mixtures in one-dimensional
systems. II. Exact results for the Kirkwood-Buff integrals.
Journal of Chemical Physics.
131, 164512.
Bennion, B. J. and V. Daggett. 2003. The molecular basis for the chemical denaturation of
proteins by urea.
Proceedings of the National Academy of Sciences of the United States
of America.
100, 5142.
Bentenitis, N., N. R. Cox, and P. E. Smith. 2009. A Kirkwood-Buff derived force field for
thiols, sulfides, and disulfides.
Journal of Physical Chemistry B.
113, 12306.
Berendsen, H. J. C., J. R. Grigera, and T. P. Straatsma. 1987. The missing term in effective pair
potentials.
Journal of Physical Chemistry.
91, 6269.
Berendsen, H. J. C., J. P. M. Postma, W. F. van Gunsteren, and J. Hermans. 1981. Interaction
models for water in relation to protein hydration. In
Intermolecular Forces
, edited by
B. Pullman. Dordrecht: D. Reidel, p. 331.
Beutler, T. C., A. E. Mark, R. C. van Schaik, P. R. Gerber, and W. F. van Gunsteren. 1994.
Avoiding singularities and numerical instabilities in free-energy calculations based on
molecular simulations.
Chemical Physics Letters.
222, 529.
Biben, T. and J. P. Hansen. 1991. Phase-separation of asymmetric binary hard-sphere fluids.
Physical Review Letters.
66, 2215.
Bjelkmar, P., P. Larsson, M. A. Cuendet, B. Hess, and E. Lindahl. 2010. Implementation of the
CHARMM force field in GROMACS: Analysis of protein stability effects from correc-
tion maps, virtual interaction sites, and water models.
Journal of Chemical Theory and
Computation.
6, 459.
Blanco, M. A., E. Sahin, Y. Li, and C. J. Roberts. 2011. Reexamining protein-protein and
protein-solvent interactions from Kirkwood-Buff analysis of light scattering in multi-
component solutions.
Journal of Chemical Physics.
134, 225103.
Blum, L. and A. J. Torruella. 1972. Invariant expansion for 2-body correlations—Thermodynamic
functions, scattering, and Ornstein-Zernike equation.
Journal of Chemical Physics.
56, 303.
Bolen, D. W. 2004. Effects of naturally occurring osmolytes on protein stability and solubility:
Issues important in protein crystallization.
Methods.
34, 312.
Bolen, D. W. and I. V. Baskakov. 2001. The osmophobic effect: Natural selection of a thermo-
dynamic force in protein folding.
Journal of Molecular Biology.
310, 955.
Bolen, D. W. and G. D. Rose. 2008. Structure and energetics of the hydrogen-bonded back-
bone in protein folding.
Annual Review of Biochemistry.
77, 339.
Bondi, A. 1964. Van der Waals volumes and radii.
Journal of Physical Chemistry.
68, 441.
Bonnet, P. and R. A. Bryce. 2004. Molecular dynamics and free energy analysis of
neuraminidase- ligand interactions.
Protein Science.
13, 946.
Bouillot, B., S. Teychene, and B. Biscans. 2011. An evaluation of thermodynamic models for
the prediction of drug and drug-like molecule solubility in organic solvents.
Fluid Phase
Equilibria.
309, 36.
Bowman, G. R., V. A. Voelz, and V. S. Pande. 2011. Taming the complexity of protein folding.
Current Opinion in Structural Biology.
21, 4.
