Biomedical Engineering Reference
In-Depth Information
Reinhart, B.J., Slack, F.J., Basson, M., Pasquinelli, A.E., Bettinger, J.C., Rougvie, A.E.,
Horvitz, H.R., and Ruvkun, G. (2000). The 21-nucleotide let-7 RNA regulates develop-
mental timing in Caenorhabditis elegans. Nature 403, 901-906.
Reya, T., Morrison, S.J., Clarke, M.F., and Weissman, I.L. (2001). Stem cells, cancer, and
cancer stem cells. Nature 414, 105-111.
Robins, H., Li, Y., and Padgett, R.W. (2005). Incorporating structure to predict microRNA
targets. Proceedings of the National Academy of Sciences of the United States of America
102, 4006-4009.
Rodriguez,A,Griffiths-Jones,S.,Ashurst,J.L.,andBradley,A.(2004).Identificationof
mammalian microRNA host genes and transcription units. Genome Research 14, 1902-1910.
Rossi, S., Sevignani, C., Nnadi, S.C., Siracusa, L.D., and Calin, G.A. (2008). Cancer-asso-
ciated genomic regions (CAGRs) and noncoding RNAs: bioinformatics and therapeutic
implications. Mammalian Genome.
Ruby, J.G., Jan, C.H., and Bartel, D.P. (2007). Intronic microRNA precursors that bypass
Drosha processing. Nature 448, 83-86, Aug; 19(7-8), 526-540.
Saetrom, P., Heale, B.S., Snove, O., Jr., Aagaard, L., Alluin, J., and Rossi, J.J. (2007).
Distance constraints between microRNA target sites dictate efficacy and cooperativity.
Nucleic Acids Research 35, 2333-2342.
Saito, Y., Liang, G., Egger, G., Friedman, J.M., Chuang, J.C., Coetzee, G.A., and Jones, P.A.
(2006). Specific activation of microRNA-127 with downregulation of the proto-oncogene
BCL6 by chromatin-modifying drugs in human cancer cells. Cancer Cell 9, 435-443.
Schratt, G.M., Tuebing, F., Nigh, E.A., Kane, C.G., Sabatini, M.E., Kiebler, M., and
Greenberg, M.E. (2006). A brain-specific microRNA regulates dendritic spine develop-
ment. Nature 439, 283-289.
Scott, G.K., Goga, A., Bhaumik, D., Berger, C.E., Sullivan, C.S., and Benz, C.C. (2007).
Coordinate suppression of ERBB2 and ERBB3 by enforced expression of micro-RNA
miR-125a or miR-125b. The Journal of Biological Chemistry 282, 1479-1486.
Seggerson, K., Tang, L., and Moss, E.G. (2002). Two genetic circuits repress the Caenorhab-
ditis elegans heterochronic gene lin-28 after translation initiation. Developmental Biology
243, 215-225.
Seitz, H., Youngson, N., Lin, S.P., Dalbert, S., Paulsen, M., Bachellerie, J.P., Ferguson-
Smith, A.C., and Cavaille, J. (2003). Imprinted microRNA genes transcribed antisense to a
reciprocally imprinted retrotransposon-like gene. Nature Genetics 34, 261-262.
Shell, S., Park, S.M., Radjabi, A.R., Schickel, R., Kistner, E.O., Jewell, D.A., Feig, C.,
Lengyel, E., and Peter, M.E. (2007). Let-7 expression defines two differentiation stages
of cancer. Proceedings of the National Academy of Sciences of the United States of
America 104, 11400-11405.
Shi, X.B., Xue, L., Yang, J., Ma, A.H., Zhao, J., Xu, M., Tepper, C.G., Evans, C.P., Kung, H.J.,
and deVereWhite, R.W. (2007). An androgen-regulated miRNA suppresses Bak1 expression
and induces androgen-independent growth of prostate cancer cells. Proceedings of the
National Academy of Sciences of the United States of America 104, 19983-19988.
Si, M.L., Zhu, S., Wu, H., Lu, Z., Wu, F., and Mo, Y.Y. (2007). miR-21-mediated tumor
growth. Oncogene 26, 2799-2803.
Singh, S.K., Kagalwala, M.N., Parker-Thornburg, J., Adams, H., and Majumder, S. (2009).
Nature DOI 10.1038/Nature07785.
Singh, S.K., Kagalwala, M.N., Parker-Thornburg, J., Adams, H., and Majumder, S. (2008).
RESTmaintains self-renewal and pluripotency of embryonic stem cells. Nature 453, 223-227.
Stiles, C.D., and Rowitch, D.H. (2008). Glioma stem cells: a midterm exam. Neuron 58, 832-846.
Strauss, W.M., Chen, C., Lee, C.T., and Ridzon, D. (2006). Nonrestrictive developmental
regulation of microRNA gene expression. Mammalian Genome 17, 833-840.
Suh, M.R., Lee, Y., Kim, J.Y., Kim, S.K., Moon, S.H., Lee, J.Y., Cha, K.Y., Chung, H.M.,
Yoon, H.S., Moon, S.Y., et al. (2004). Human embryonic stem cells express a unique set of
microRNAs. Developmental Biology 270, 488-498.
