Agriculture Reference
In-Depth Information
Table 2.5
(continued)
Database Name
Plant Species/Purpose
Uniform Resource Locator
(URL)
Publication Detail
Arabidopsis whole genome tilling
array and expression and tran-
script identification
ChIP-Seq
On line analysis tool; cross-referenc-
ing numerous datasets and gene
expression profiles
MACS—Model-based
Analysis for ChIP-Seq
Model based analysis for ChIP Seq
datasets and software
SOLiD® ChIP-Seq | Life
Technologies
Chromatin immunoprecipitation
(ChIP) sequencing kits protocols
Chromatin Immunopre-
cipitation sequencing
(ChIP-Seq)—Data
ChIP sequencing technology; chro-
matin immunoprecipitation
On-Chip Transcriptome Research
The on-chip
in situ
oligo synthesis-based method is a light-directed chemical pro-
cess that combines solid
-
phase synthesis with photolithographic techniques. This
method was initially employed with the Affymetrix-manufactured GeneChip Array
system. In the Affymetrix GeneChip system, a known gene or potentially expressed
sequence is represented on the chip by up to 20 unique oligonucleotide probes.
The 'On-Chip' technology is fast becoming more readily available and more cost
effective.
High Density DNA Array
Roche NimbleGen and Agilent Technology offer platforms to manufacture high-
density DNA arrays based on Roche's patented Maskless Array Synthesizer (MAS)
technology, and on a non-contact industrial inkjet printing process, both of which
are also used for
in situ
oligonucleotide synthesis.
NCBI Gene Expression Omnibus (GEO)
NCBI's Gene Expression Omnibus (GEO) and the European Bioinformatics Insti-
tute (EBI)'s ArrayExpress are important web sites serving as primary archives of
Search WWH ::
Custom Search