Agriculture Reference
In-Depth Information
Table 2.4
Integrative databases for Microarray and Microchip technology and analysis in plants
Database Name
Plant Species/Purpose
Uniform Resource Locator
(URL)
Serial Analysis of Gene
Expression
Serial analysis of gene expres-
sion (SAGE) information
page
Serial Analysis of Gene
Expression-SAGE™ |
Life Technologies
SAGE differential expression
of genes
Microarray, SAGE and
other gene expression
databases | HSLS
Microarray, SAGE and gene
expression data bases;
multi-species
Serial Analysis of Gene
Expression
Applications for SAGE; multi
purpose
GermSAGE | Home
Germ cell line SAGE; mainly
animal species
Bioinformatics resources
Ultimate web site for SAGE;
applications, information,
books etc
MAGE—Workgroups—
FGED
Microarray Analysis of Gene
Expression; MAGE site
CEA Direction des sciences
du vivant—iBiTec-S:
Adaptation du SAGE
pour micro-quantités
SADE; SAGE adaptation
for downsized extracts
(microquantities)
Next-Gen Sequence
Databases
Next-generation sequences
databases; some commercial
crops
PlantPromoterDB
Genome sequences and regula-
tory elements for Rice and
Arabidopsis
UniGene
The digital differential display (DDD) tool, a component of the NCBI's UniGene
database has been applied in large-scale cDNA projects for various species, includ-
ing crop plants (Mochida et al.
2003
; Fei et al.
2004
; Sterky et al.
2004
; Zhang et al.
2004
). Although this approach, coupled with cDNA clone resources has facilitated
gene discovery and expression profiling, various disadvantages including high cost
and limited resolution due to the need for large-scale sequencing are still present.
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