Agriculture Reference
In-Depth Information
Table 2.1   List of plant species in which partial or whole genomes have been sequenced. (Data
extracted from the following internet sites: http://www.ncbi.nlm.nih.gov/genomes/PLANTS/
PlantList.html; http://www.arabidopsis.org/portals/genAnnotation/other_genomes/index.jsp;
http://www.ildis.org/)
Division
Class
Species
Non Vascular Algae
Chlamydomonas reinhardtii Chlorella variabilis Cocco-
myxa sp. Cyanidioschyzon merolae Ectocarpus siliculo-
sus Micromonas pusilla Micromonas sp. Ostreococcus
lucimarinus Ostreococcus tauri Volvox carteri Zostera
marina
Bryophytes
Physcomitrella patens Selaginella moellendorffii
Vascular
Dicotyledons Amborella trichopoda Aquilegia sp. Arabidopsis lyrata
Arabidopsis thaliana Arachis hypogaea Asclepias syri-
aca Beta vulgaris Boechera holboellii Brassica napus
Brassica napa Brassica rapa Caffea caneophora Cajanus
cajan Cannabis sativa Capsella rubella Carica papaya
Castanea mollissima Citrullus lanatus Citrus clementine
Corchorus olitorius Cucumis sativus Eucalyptus grandis
Fragaria vesca Glycine max Gossypium hirsutum Gos-
sypium raimonddi Hordeum vulgare Jatropha curcas
Lactuca sativa Linum usitatissinun Lotus japonicas
Malus domestica Manihot esculenta Medicago trun-
catula Mimulus guttatus Phaseolus vulgaris Pinus taeda
Populus tremula Ricinus communis Theobroma cacao
Populus nigra Populus trichocarpa Prunus avium Prunus
persica Pyrus bretschneideri Rubus idaeus Salix purpure
Solanum lycopersicum Solanum pimpinellifolium
Solanum tuberosum Spirodella polyrhiza Thellungiella
parvula Vitis vinifera
Monocotyledons Brachypodium distachyon Elaeis guineensis Miscanthus
giganteus Musa acuminate malaccensis Oryza sativa
Oryza glaberrima Panicum hallii Panicum virgatum
Phoenix dactylifera Seratia italic Sorghum bicolor Triti-
cum aestivum Zea mays
many other records of plants there. The current version consists of documentation
in at least 115 different plants with partial sequences, and about 40,000 Expressed
Sequence Tags (ESTs). It also contains separate sites and resources for other web
based tools, data banks and other web servers, including agronomically important
crops for food or fruit, medicinal plants, a number of green algae, pathogenic bac-
teria and fungi, viruses and animals. It will be important to become familiar and
navigate through this very important site.
Phytozome
The site includes genome sequences and data sets for various crop species designed
to facilitate comparative genomic studies amongst other green plants. The current
version consists of 31 plant species wholly or partially sequenced, and is set-up into
10 evolutionary significant nodes.
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