Agriculture Reference
In-Depth Information
Table 2.12
Integrative databases for Comparison Genomics Database analysis in plants
Database Name
Plant Species/Purpose
Uniform Resource Locator
(URL)
SIGnAL: Salk Institute
Genomic Analysis
Laboratory Home Page
Salk insertion sequence data-
base; Rice, Arabidopsis
included, also Human data
RARGE- RIKEN Ara-
bidopsis Genome
Encyclopedia
Site for downloading a number
of important web brows-
ers and search engines for
Arabidopsis
WebGBrowse
Generic genome browser used
for display along reference
sequences
GBrowse.org Home Page
Portal for entry to software,
repository, and browsers
Generic Model Organ-
ism Database Proj-
ect—Generic Genome
Browser at SourceForge.
net
A free and easy to use database
and browser in a number of
different languages
Sol Genomics Network
Solonaceae website for QTL
and molecular breeding;
mainly tomato
SoyBase.org
SoyBase and soybean breed-
ers toolbox; molecular and
physiological data present
MaizeGDB
Maize informatics; molecular
and physiological data
present
Plant Genome Duplication
Database
Database to catalogue whole
plant genomes; focus on 30
agronomic flowering plants
GRASSIUS: Plant Genome
Project
Systems approach to identify
regulatory netwirks in
grasses
GRASSIUS: About
Home Page for extensive web
resource for gene expres-
sion, and regulation in
grasses
GRASSIUS: GrassTFDB:
Transcription Factor
Database
Transcriptional factors database
for grasses; maize, sugar-
cane, sorghum and rice
LegumeTFDB
Digital library and database
for legume transcriptional
factors
SoybeanTFDB
Digital library and database
for legume transcriptional
factors
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