Agriculture Reference
In-Depth Information
Table 2.11
Integrative databases for Phenotype and Genotype Tagging analysis in plants
Database Name
Plant Species/Purpose
Uniform Resource Locator
(URL)
SNPs between Nip-
ponbare IRGSP
build4—Koshihikari
Generic browser for SNP in
plants, animals and micoor-
ganisms, and chromosome
locations
Rice Genome Annotation
Project
Sequence annotation of the 12
rice chromosomes
OryzaSNP @ MSU
Rice SNP identification and
sequence; over 150,000 high
quality SNP
OryGenesDB: database for
rice reverse genetics
Rice database and information
on Flanking Sequence Tags
(FST)
FOX Hunting | RIKEN
SciNetS
Full-length cDNA library for
plant expression studies by
repeated transformation
Rice FOX Database
Rice full-length cDNA over-
expressed Arabidopsis
mutant database website
Tilling
Targeting induced local lesions
in genomes website; wide
application in plant gene
function and breeding
TILLING Genes To
Improve Soybeans
Soybean targeting induced local
lesions in genomes site
About RevGen UK
Platform and data for gel based
reverse genetics in Lotus,
Medicago, Brassica
TILLING DATABASE
Platform and databank for
phenotype recording in Pea,
Tomato and Brachypodium
CATMA Website
Complete Arabidopsis tran-
scriptome microarray page
for gene specific tag (GST)
http://www.agrikola.org/
Systematic RNAi knockouts in
Arabidopsis GST from the
CATMA consortium
GO:0009616 virus induced
gene silencing
Virus induced gene silencing
wbsite; including cross-links
fioreDB: Database for
Flower Bio-engineering
by CRES-T system
Gene silencing technology and
database for genes encoding
crop, flower factors
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