Agriculture Reference
In-Depth Information
Table 2.8
Integrative databases for Structural Proteomics analysis in plants
Database Name
Plant Species/Purpose
Uniform Resource Locator
(URL)
International Structural
Genomics Organization
ISGO main web site: Reports,
Activities and Publications
Welcome to RSGI
(RIKEN)
RIKEN Structural Genomic
Proteomic Initiative—Home
page
RSGI (RIKEN Structural
Genomics/Proteomics
Initiative) structure |
Integrated Database of
Protein | SciNetS
Integrated database for pro-
tein structure, including
Arabidopsis
Download | (RIKEN
Structural Genomics/
Proteomics Initiative)
Somantic Ontology
Class Database | RDF/
OWL
Download web page for most
of the RIKEN proteomic
software
Home : PSI-Nature
Structural Biology
Knowledgebase
Web site to keep informed on
structural genomics and
biology
The Protein Structure
Initiative: achievements
and visions for the
future—F1000 Biology
Web site for research articles
and methods on structural
genomics and structural
biology
PSI Pilot Phase Fact
Sheet—National Insti-
tute of General Medical
Sciences
NIH web site for proteomics
fact sheets and protein infor-
mation in mainly the health
sciences
RCSB Protein Data
Bank—RCSB PDB
Portal and search engine
-Biological Macromolecular
Structures and Resouces
CLC bio: Integrated 3D
molecule viewer
Integrated workbench for
analyzing 2D gel data and
MS peptide fingerprinting
profiles
I-TASSER server for
protein structure and
function prediction
Complete function and structure
prediction for over 1,00,000
proteins from international
sources linked to the NCBI
protein databanks
DisEMBL 1.5—Predic-
tors of intrinsic protein
disorder
Intrinsic protein disorder
prediction web site linked to
SWISS protein identification
GTOP database
Genomes TO Protein structure
and function site; unfor-
tunately contains no plant
data, but has interesting
bacteria and virus
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