Biomedical Engineering Reference
In-Depth Information
Mortimer SA, Weeks KM (2009) C2¢-endo nucleotides as molecular timers suggested by the folding
of an RNA domain. Proc Natl Acad Sci USA 106:15622-15627
Peattie DA, Gilbert W (1980) Chemical probes for higher-order structure in RNA. Proc Natl Acad
Sci USA 77:4679-4682
Soukup GA, Breaker RR (1999) Relationship between internucleotide linkage geometry and the
stability of RNA. RNA 5:1308-1325
Stern S, Moazed D, Noller HF (1988) Structural analysis of RNA using chemical and enzymatic
probing monitored by primer extension. Methods Enzymol 164:481-489
Vasa SM, Guex N, Wilkinson KA, Weeks KM, Giddings MC (2008) ShapeFinder: a software
system for high-throughput quantitative analysis of nucleic acid reactivity information resolved
by capillary electrophoresis. RNA 14:1979-1990
Watts JM, Dang KK, Gorelick RJ, Leonard CW, Bess JW Jr, Swanstrom R, Burch CL, Weeks KM
(2009) Architecture and secondary structure of an entire HIV-1 RNA genome. Nature 460:711-716
Weeks KM (2010) Advances in RNA structure analysis by chemical probing. Curr Opin Struct
Biol 20:295-304
Wilkinson KA, Gorelick RJ, Vasa SM, Guex N, Rein A, Mathews DH, Giddings MC, Weeks KM
(2008) High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly
conserved across distinct biological states. PLoS Biol 6:e96
Wilkinson KA, Vasa SM, Deigan KE, Mortimer SA, Giddings MC, Weeks KM (2009) Influence
of nucleotide identity on ribose 2¢-hydroxyl reactivity in RNA. RNA 15:1314-1321
Wittberger D, Berens C, Hammann C, Westhof E, Schroeder R (2000) Evaluation of uranyl photo-
cleavage as a probe to monitor ion binding and flexibility in RNAs. J Mol Biol 300:339-352
Ying BW, Fourmy D, Yoshizawa S (2007) Substitution of the use of radioactivity by fluorescence
for biochemical studies of RNA. RNA 13:2042-2050
Search WWH ::




Custom Search