Biomedical Engineering Reference
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Sharma MR, Barat C, Wilson DN, Booth TM, Kawazoe M, Hori-Takemoto C, Shirouzu M,
Yokoyama S, Fucini P, Agrawal RK (2005) Interaction of Era with the 30S ribosomal subunit
implications for 30S subunit assembly. Mol Cell 18(3):319-329
Sharma MR, Wilson DN, Datta PP, Barat C, Schluenzen F, Fucini P, Agrawal RK (2007) Cryo-EM
study of the spinach chloroplast ribosome reveals the structural and functional roles of plastid-
specific ribosomal proteins. Proc Natl Acad Sci U S A 104(49):19315-19320
Sharma MR, Bootha TM, Simpsonb L, Maslovc DA, Agrawal RK (2009) Structure of a mitochon-
drial ribosome with minimal RNA. Proc Natl Acad Sci U S A 106(24):9637-9642
Sharma MR, Donhofer A, Barat C, Marquez V, Datta PP, Fucini P, Wilson DN, Agrawal RK (2010)
PSRP1 is not a ribosomal protein, but a ribosome-binding factor that is recycled by the ribo-
some-recycling factor (RRF) and elongation factor G (EF-G). J Biol Chem 285(6):
4006-4014
Simonetti A, Marzi S, Myasnikov AG, Fabbretti A, Yusupov M, Gualerzi CO, Klaholz BP (2008)
Structure of the 30S translation initiation complex. Nature 455(7211):416-420
Spahn CM, Grassucci RA, Penczek P, Frank J (1999) Direct three-dimensional localization and
positive identification of RNA helices within the ribosome by means of genetic tagging and
cryo-electron microscopy. Structure 15:1567-1573
Spahn C, Jan E, Mulder A, Grassucci RA, Sarnow P, Frank J (2004) Cryo-EM visualization of
a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an
RNA-based translation factor. Cell 118:465-475
Spencer AC, Spremulli LL (2005) The interaction of mitochondrial translational initiation factor 2
with the small ribosomal subunit. Biochim Biophys Acta 1750:69-81
Stark H, Rodnina MV, Wieden HJ, Zemlin F, Wintermeyer W, Van Heel M (2002) Ribosome inter-
actions of aminoacyl-tRNA and elongation factor Tu in the codon-recognition complex. Nat
Struct Biol 9:849-854
Tama F, Valle M, Frank J, Brooks CL 3rd (2003) Dynamic reorganization of the functionally active
ribosome explored by normal mode analysis and cryo-electron microscopy. Proc Natl Acad Sci
U S A 100(16):9319-9323
Trabuco LG, Villa E, Mitra K, Frank J, Schulten K (2008) Flexible fitting of atomic structures into
electron microscopy maps using molecular dynamics. Structure 16(5):673-683
Valle M, Sengupta J, Swami NK, Grassucci RA, Burkhardt N, Nierhaus KH, Agrawal RK, Frank
J (2002) Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process.
EMBO J 21:3557-3567
Valle M, Zavialov A, Li W, Stagg SM, Sengupta J, Nielsen RC, Nissen P, Harvey SC, Ehrenberg
M, Frank J (2003a) Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-elec-
tron microscopy. Nat Struct Biol 10:899-906
Valle M, Zavialov A, Sengupta J, Rawat U, Ehrenberg M, Frank J (2003b) Locking and unlocking
of ribosomal motions. Cell 114:123-134
Van Heel M (1987) Angular reconstitution: a posteriori assignment of projection directions for 3D
reconstruction. Ultramicroscopy 21:111-124
Villa E, Sengupta J, Trabuco LG, LeBarron J, Baxter WT, Shaikh TR, Grassucci RA, Nissen P,
Ehrenberg M, Schulten K, Frank J (2009) Ribosome-induced changes in elongation factor Tu
conformation control GTP hydrolysis. Proc Natl Acad Sci U S A 106(4):1063-1068
Voorhees RM, Schmeing TM, Kelley AC, Ramakrishnan V (2010) The mechanism for activation
of GTP hydrolysis on the ribosome. Science 330(6005):835-838
Wriggers W, Agrawal RK, Drew DL, McCammon A, Frank J (2000) Domain motions of EF-G
bound to the 70S ribosome: insights from a hand-shaking between multi-resolution structures.
Biophys J 79(3):1670-1678
Yamaguchi K, Subramanian AR (2000) The plastid ribosomal proteins. J Biol Chem 275(37):
28466-28482
Yamaguchi K, Subramanian AR (2003) Proteomic identi fi cation of all plastid-speci fi c ribosomal
proteins in higher plant chloroplast 30S ribosomal subunit. Eur J Biochem 270:190-205
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