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Ogle JM, Murphy FV, Tarry MJ, Ramakrishnan V (2002) Selection of tRNA by the ribosome
requires a transition from an open to a closed form. Cell 111:721-732
Pisarev AV, Kolupaeva VG, Yusupov MM, Hellen CU, Pestova TV (2008) Ribosomal position and
contacts of mRNA in eukaryotic translation initiation complexes. EMBO J 27:1609-1621
Rabl J, Leibundgut M, Ataide SF, Haag A, Ban N (2011) Crystal structure of the eukaryotic 40S
ribosomal subunit in complex with initiation factor 1. Science 331:730-736
Rinke-Appel J, Junke N, Brimacombe R, Lavrik I, Dokudovskaya S et al (1994) Contacts between
16S ribosomal RNA and mRNA, within the spacer region separating the AUG initiator codon
and the Shine-Dalgarno sequence; a site-directed cross-linking study. Nucleic Acids Res
22:3018-3025
Rozenski J, Crain PF, McCloskey JA (1999) The RNA modification database: 1999 update. Nucleic
Acids Res 27:196-197
Schurr T, Nadir E, Margalit H (1993) Identification and characterization of E. coli ribosomal bind-
ing sites by free energy computation. Nucleic Acids Res 21:4019-4023
Schuwirth BS, Borovinskaya MA, Hau CW, Zhang W, Vila-Sanjurjo A et al (2005) Structures of
the bacterial ribosome at 3.5 A resolution. Science 310:827-834
Selmer M, Dunham CM, Murphy FVt, Weixlbaumer A, Petry S et al (2006) Structure of the 70S
ribosome complexed with mRNA and tRNA. Science 313:1935-1942
Sengupta J, Nilsson J, Gursky R, Spahn CM, Nissen P et al (2004) Identification of the versatile
scaffold protein RACK1 on the eukaryotic ribosome by cryo-EM. Nat Struct Mol Biol
11:957-962
Shine J, Dalgarno L (1974) The 3¢-terminal sequence of Escherichia coli 16S ribosomal RNA:
complementarity to nonsense triplets and ribosome binding sites. Proc Natl Acad Sci USA
71:1342-1346
Sonenberg N, Hinnebusch AG (2009) Regulation of translation initiation in eukaryotes: mecha-
nisms and biological targets. Cell 136:731-745
Spahn CM, Beckmann R, Eswar N, Penczek PA, Sali A et al (2001a) Structure of the 80S ribosome
from Saccharomyces cerevisiae -tRNA-ribosome and subunit-subunit interactions. Cell
107:373-386
Spahn CM, Kieft JS, Grassucci RA, Penczek PA, Zhou K et al (2001b) Hepatitis C virus IRES
RNA-induced changes in the conformation of the 40s ribosomal subunit. Science
291:1959-1962
Spahn CM, Gomez-Lorenzo MG, Grassucci RA, Jorgensen R, Andersen GR et al (2004a) Domain
movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA trans-
location. EMBO J 23:1008-1019
Spahn CM, Jan E, Mulder A, Grassucci RA, Sarnow P et al (2004b) Cryo-EM visualization of a
viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-
based translation factor. Cell 118:465-475
Spirin AS (1969) A model of the functioning ribosome: locking and unlocking of the ribosome
subparticles. Cold Spring Harb Symp Quant Biol 34:197-207
Stark H, Orlova EV, Rinke-Appel J, Junke N, Mueller F et al (1997a) Arrangement of tRNAs in
pre- and posttranslocational ribosomes revealed by electron cryomicroscopy. Cell 88:19-28
Stark H, Rodnina MV, Rinke-Appel J, Brimacombe R, Wintermeyer W et al (1997b) Visualization
of elongation factor Tu on the Escherichia coli ribosome. Nature 389:403-406
Taylor DJ, Devkota B, Huang AD, Topf M, Narayanan E et al (2009) Comprehensive molecular
structure of the eukaryotic ribosome. Structure 17:1591-1604
Urbonavicius J, Qian Q, Durand JM, Hagervall TG, Bjork GR (2001) Improvement of reading
frame maintenance is a common function for several tRNA modifications. EMBO J
20:4863-4873
Urbonavicius J, Stahl G, Durand JM, Ben Salem SN, Qian Q et al (2003) Transfer RNA modifications
that alter +1 frameshifting in general fail to affect −1 frameshifting. RNA 9:760-768
Valle M, Zavialov A, Sengupta J, Rawat U, Ehrenberg M et al (2003) Locking and unlocking of
ribosomal motions. Cell 114:123-134
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