Biomedical Engineering Reference
In-Depth Information
Lee ER, Blount KF, Breaker RR (2009) Roseoflavin is a natural antibacterial compound that binds
to FMN riboswitches and regulates gene expression. RNA Biol 6(2):187-194
Li Y, Shen J, Sun X, Li W, Liu G, Tang Y (2010) Accuracy assessment of protein-based docking
programs against RNA targets. J Chem Inf Model 50(6):1134-1146
Lind KE, Du Z, Fujinaga K, Peterlin BM, James TL (2002) Structure-based computational data-
base screening, in vitro assay, and NMR assessment of compounds that target TAR RNA.
Chem Biol 9(2):185-193
Lipinski CA, Lombardo F, Dominy BW, Feeney PJ (1997) Experimental and computational
approaches to estimate solubility and permeability in drug discovery and development settings.
Adv Drug Deliv Rev 23:3-25
Mandal M, Boese B, Barrick JE, Winkler WC, Breaker RR (2003) Riboswitches control funda-
mental biochemical pathways in Bacillus subtilis and other bacteria. Cell 113(5):577-586
Martin YC (1992) 3D database searching in drug design. J Med Chem 35(12):2145-2154
Martinez HM, Maizel JV Jr, Shapiro BA (2008) RNA2D3D: a program for generating, viewing,
and comparing 3-dimensional models of RNA. J Biomol Struct Dyn 25(6):669-683
Matzura O, Wennborg A (1996) RNAdraw: an integrated program for RNA secondary structure
calculation and analysis under 32-bit Microsoft Windows. Comput Appl Biosci 12(3):
247-249
McInnes C (2007) Virtual screening strategies in drug discovery. Curr Opin Chem Biol 11(5):
494-502
Miranda-Ríos J, Navarro M, Soberón M (2001) A conserved RNA structure (thi box) is involved
in regulation of thiamin biosynthetic gene expression in bacteria. Proc Natl Acad Sci U S A
98(17):9736-9741
Mironov AS, Gusarov I, Rafikov R, Lopez LE, Shatalin K, Kreneva RA, Perumov DA, Nudler E
(2002) Sensing small molecules by nascent RNA: a mechanism to control transcription in
bacteria. Cell 111(5):747-756
Moitessier N, Westhof E, Hanessian S (2006) Docking of aminoglycosides to hydrated and
flexible RNA. J Med Chem 49(3):1023-1033
Morley SD, Afshar M (2004) Validation of an empirical RNA-ligand scoring function for fast
flexible docking using Ribodock. J Comput Aided Mol Des 18:189-208
Morris GM, Goodsell DS, Halliday RS, Huey R, Hart WE, Belew RK, Olson AJ (1998) Automated
docking using a lamarckian genetic algorithm and an empirical binding free energy function.
J Comput Chem 19:1639-1662
Neu HC (1992) The crisis in antibiotic resistance. Science 257(5073):1064-1073
Nix J, Sussman D, Wilson C (2000) The 1.3 Å crystal structure of a biotin-binding pseudoknot and
the basis for RNA molecular recognition. J Mol Biol 296(5):1235-1244
Parisien M, Major F (2008) The MC-fold and MC-Sym pipeline infers RNA structure from
sequence data. Nature 452(7183):51-55
Park SJ, Jung YH, Kim YG, Park HJ (2008) Identification of novel ligands for the RNA pseudo-
knot that regulate −1 ribosomal frameshifting. Bioorg Med Chem 16(8):4676-4684
Park SJ, Kim YG, Park HJ (2011) Identification of RNA pseudoknot-binding ligand that inhibits
the −1 ribosomal frameshifting of SARS-Coronavirus by structure-based virtual screening.
J Am Chem Soc 133(26):10094-10100
Paulus C, Hellebrand S, Tessmer U, Wolf H, Kräusslich HG, Wagner R (1999) Competitive inhibi-
tion of human immunodeficiency virus type-1 protease by the Gag-Pol transframe protein.
J Biol Chem 30:21539-21543
Perrin L, Telenti A (1998) HIV treatment failure: testing for HIV resistance in clinical practice.
Science 280(5371):1871-1873
Pinto IG, Guilbert C, Ulyanov NB, Stearns J, James TL (2008) Discovery of ligands for a novel
target, the human telomerase RNA, based on flexible-target virtual screening and NMR. J Med
Chem 51:7205-7215
Plant EP, Pérez-Alvarado GC, Jacobs JL, Mukhopadhyay B, Hennig M, Dinman JD (2005)
A three-stemmed mRNA pseudoknot in the SARS coronavirus frameshift signal. PLoS Biol
3(6):e172
Search WWH ::
Custom Search