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during oogenesis. Dev Cell 8(4):505-515. doi: S1534-5807(05)00016-X [pii] 10.1016/j.
devcel.2005.01.012
Das R, Baker D (2007) Automated de novo prediction of native-like RNA tertiary structures. Proc
Natl Acad Sci U S A 104(37):14664-14669. doi: 0703836104 [pii] 10.1073/pnas.0703836104
Delanoue R, Herpers B, Soetaert J, Davis I, Rabouille C (2007) Drosophila Squid/hnRNP helps
dynein switch from a gurken mRNA transport motor to an ultrastructural static anchor in
sponge bodies. Dev Cell 13(4):523-538. doi: S1534-5807(07)00344-9 [pii] 10.1016/j.
devcel.2007.08.022
Dienstbier M, Boehl F, Li X, Bullock SL (2009) Egalitarian is a selective RNA-binding protein
linking mRNA localization signals to the dynein motor. Genes Dev 23(13):1546-1558.
doi: gad.531009 [pii] 10.1101/gad.531009
Do CB, Woods DA, Batzoglou S (2006) CONTRAfold: RNA secondary structure prediction with-
out physics-based models. Bioinformatics 22(14):e90-e98. doi: 22/14/e90 [pii] 10.1093/bioin-
formatics/btl246
Dreyfuss G, Kim VN, Kataoka N (2002) Messenger-RNA-binding proteins and the messages they
carry. Nat Rev Mol Cell Biol 3(3):195-205. doi: 10.1038/nrm760 nrm760 [pii]
Forrest KM, Gavis ER (2003) Live imaging of endogenous RNA reveals a diffusion and entrap-
ment mechanism for nanos mRNA localization in Drosophila. Curr Biol 13(14):1159-1168.
doi: S0960982203004512 [pii]
Garcia-Mayoral MF, Diaz-Moreno I, Hollingworth D, Ramos A (2008) The sequence selectivity of
KSRP explains its flexibility in the recognition of the RNA targets. Nucleic Acids Res
36(16):5290-5296. doi: gkn509 [pii] 10.1093/nar/gkn509
Geisler R, Rauch GJ, Geiger-Rudolph S, Albrecht A, van Bebber F, Berger A, Busch-Nentwich E,
Dahm R, Dekens MP, Dooley C, Elli AF, Gehring I, Geiger H, Geisler M, Glaser S, Holley S,
Huber M, Kerr A, Kirn A, Knirsch M, Konantz M, Kuchler AM, Maderspacher F, Neuhauss
SC, Nicolson T, Ober EA, Praeg E, Ray R, Rentzsch B, Rick JM, Rief E, Schauerte HE, Schepp
CP, Schonberger U, Schonthaler HB, Seiler C, Sidi S, Sollner C, Wehner A, Weiler C, Nusslein-
Volhard C (2007) Large-scale mapping of mutations affecting zebrafish development. BMC
Genomics 8:11. doi: 1471-2164-8-11 [pii] 10.1186/1471-2164-8-11
Gonzalez I, Buonomo SB, Nasmyth K, von Ahsen U (1999) ASH1 mRNA localization in yeast involves
multiple secondary structural elements and Ash1 protein translation. Curr Biol 9(6):337-340
Goodrich JS, Clouse KN, Schupbach T (2004) Hrb27C, Sqd and Otu cooperatively regulate gurken
RNA localization and mediate nurse cell chromosome dispersion in Drosophila oogenesis.
Development 131(9):1949-1958. doi: 10.1242/dev.01078 dev.01078 [pii]
Hafner M, Landthaler M, Ascano M, Khorshid M, Burger L, Zavolan M, Tuschl T, Hausser J,
Berninger P, Rothballer A, Jungkamp A-C, Munschauer M, Ulrich A, Wardle GS, Dewell S
(2010) PAR-CliP—a method to identify transcriptome-wide the binding sites of RNA binding
proteins. J Vis Exp 41:e2034
Hajdin CE, Ding F, Dokholyan NV, Weeks KM (2010) On the significance of an RNA tertiary
structure prediction. RNA 16(7):1340-1349. doi: rna.1837410 [pii] 10.1261/rna.1837410
Hamilton RS, Davis I (2007) RNA localization signals: deciphering the message with bioinformat-
ics. Semin Cell Dev Biol 18(2):178-185
Hamilton RS, Davis I (2011) Identifying and searching for conserved RNA localisation signals.
Methods Mol Biol 714:447-466. doi: 10.1007/978-1-61779-005-8_27
Hamilton RS, Hartswood E, Vendra G, Jones C, Van De Bor V, Finnegan D, Davis I (2009) A
bioinformatics search pipeline, RNA2DSearch, identifies RNA localization elements in
Drosophila retrotransposons. RNA 15(2):200-207. doi: 15/2/200 [pii] 10.1261/rna.1264109
Hamilton RS, Parton RM, Oliveira RA, Vendra G, Ball G, Nasmyth K, Davis I (2010) ParticleStats:
open source software for the analysis of particle motility and cytoskeletal polarity. Nucleic
Acids Res 38(Web Server issue):W641-646. doi: gkq542 [pii]10.1093/nar/gkq542
Herpers B, Rabouille C (2004) mRNA localization and ER-based protein sorting mechanisms
dictate the use of transitional endoplasmic reticulum-golgi units involved in gurken transport in
Drosophila oocytes. Mol Biol Cell 15(12):5306-5317. doi: 10.1091/mbc.E04-05-0398 E04-05-
0398 [pii]
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