Analyses of RNA–Ligand Interactions by Fluorescence Anisotropy - Biophysical Approaches to Translational Control of Gene Expression - page 194

Lu JY, Sadri N, Schneider RJ (2006) Endotoxic shock in AUF1 knockout mice mediated by failure
to degrade proinflammatory cytokine mRNAs. Genes Dev 20:3174-3184
Maag D, Lorsch JR (2003) Communication between eukaryotic translation initiation factors 1 and
1A on the yeast small ribosomal subunit. J Mol Biol 330:917-924
Mao C, Flavin KG, Wang S, Dodson R, Ross J, Shapiro DJ (2006) Analysis of RNA-protein inter-
actions by a microplate-based fluorescence anisotropy assay. Anal Biochem 350:222-232
Marcotrigiano J, Gingras AC, Sonenberg N, Burley SK (1997) Cocrystal structure of the messenger
RNA 5¢ cap-binding protein (eIF4E) bound to 7-methyl-GDP. Cell 89:951-961
Meisner NC, Hintersteiner M, Mueller K, Bauer R, Seifert JM, Naegeli HU, Ottl J, Oberer L,
Guenat C, Moss S, Harrer N, Woisetschlaeger M, Buehler C, Uhl V, Auer M (2007) Identification
and mechanistic characterization of low-molecular-weight inhibitors for HuR. Nat Chem Biol
3:508-515
Mitchell SF, Walker SE, Algire MA, Park EH, Hinnebusch AG, Lorsch JR (2010) The 5¢ -7-meth-
ylguanosine cap on eukaryotic mRNAs serves both to stimulate canonical translation initiation
and to block an alternative pathway. Mol Cell 39:950-962
Owicki JC (2000) Fluorescence polarization and anisotropy in high throughput screening: perspec-
tives and primer. J Biomol Screen 5:297-306
Ranji A, Shkriabai N, Kvaratskhelia M, Musier-Forsyth K, Boris-Lawrie K (2011) Features of
double-stranded RNA-binding domains of RNA helicase A are necessary for selective recogni-
tions and translation of complex mRNAs. J Biol Chem 286:5328-5337
Sadana A (2001) A kinetic study of analyte-receptor binding and dissociation, and dissociation
alone, for biosensor applications: a fractal analysis. Anal Biochem 291:34-47
Sarkar S, Han J, Sinsimer KS, Liao B, Foster RL, Brewer G, Pestka S (2011) RNA-binding protein
AUF1 regulates lipopolysaccharide-induced IL-10 expression by activating IkB kinase com-
plex in monocytes. Mol Cell Biol 31:602-615
Wagner BJ, DeMaria CT, Sun Y, Wilson GM, Brewer G (1998) Structure and genomic organiza-
tion of the human AUF1 gene: alternative pre-mRNA splicing generates four protein isoforms.
Genomics 48:195-202
Wilson GM (2005) RNA folding and RNA-protein binding analyzed by fluorescence anisotropy
and resonance energy transfer. In: Geddes CD, Lakowicz JR (eds) Reviews in fluorescence, vol
2. Springer, New York, pp 223-243
Wilson GM, Sutphen K, Bolikal S, Chuang K, Brewer G (2001) Thermodynamics and kinetics
of Hsp70 association with A+U-rich mRNA-destabilizing sequences. J Biol Chem 276:
44450-44456
Wilson GM, Lu J, Sutphen K, Suarez Y, Sinha S, Brewer B, Villanueva-Feliciano EC, Ylsa RM,
Charles S, Brewer G (2003) Phosphorylation of p40 AUF1 regulates binding to A + U-rich mRNA-
destabilizing elements and protein-induced changes in ribonucleoprotein structure. J Biol
Chem 278:33039-33048
Yan Y, Marriott G (2003) Analysis of protein interactions using fluorescence technologies. Curr
Opin Chem Biol 7:635-640
Yumak H, Khan MA, Goss DJ (2010) Poly(A) tail affects equilibrium and thermodynamic behav-
ior of tobacco etch virus mRNA with translation initiation factors elF4F, elF4B and PABP.
Biochim Biophys Acta 1799:653-658
Zhang JH, Chung T, Oldenburg K (1999) A simple statistical parameter for use in evaluation and
validation of high throughput screening assays. J Biomol Screen 4:67-73
Zucconi BE, Ballin JD, Brewer BY, Ross CR, Huang J, Toth EA, Wilson GM (2010) Alternatively
expressed domains of AU-rich element RNA-binding protein 1 (AUF1) regulate RNA-binding
affinity, RNA-induced protein oligomerization, and the local conformation of bound RNA
ligands. J Biol Chem 285:39127-39139