Biology Reference
In-Depth Information
Lee, J., Han, K., Meyer, T. J., Kim, H. S., and Batzer, M. A. (2008). Chromosomal inversions between
human and chimpanzee lineages caused by retrotransposons. PLoS ONE 3, e4047.
Lees-Murdock, D. J., De Felici, M., and Walsh, C. P. (2003). Methylation dynamics of repetitive
DNA elements in the mouse germ cell lineage. Genomics 82, 230-237.
Leibold, D. M., Swergold, G. D., Singer, M. F., Thayer, R. E., Dombroski, B. A., and Fanning, T. G.
(1990). Translation of LINE-1 DNA elements in vitro and in human cells. Proc. Natl. Acad. Sci.
USA 87, 6990-6994.
Lev-Maor, G., Sorek, R., Shomron, N., and Ast, G. (2003). The birth of an alternatively spliced
exon: 3
0
splice-site selection in Alu exons. Science 300, 1288-1291.
Li, R., Ye, J., Li, S., Wang, J., Han, Y., Ye, C., Wang, J., Yang, H., Yu, J., Wong, G. K., et al. (2005).
ReAS: Recovery of ancestral sequences for transposable elements from the unassembled reads of a
whole genome shotgun.
PLoS Comput. Biol. 1, e43.
Li, P. W., Li, J., Timmerman, S. L., Krushel, L. A., and Martin, S. L. (2006). The dicistronic RNA
from the mouse LINE-1 retrotransposon contains an internal ribosome entry site upstream of each
ORF: Implications for retrotransposition.
Nucleic Acids Res. 34, 853-864.
Lieber, M. R. (2010). The mechanism of double-strand DNA break repair by the nonhomologous
DNA end-joining pathway.
Annu. Rev. Biochem. 79, 181-211.
Lin, L., Shen, S., Tye, A., Cai, J. J., Jiang, P., Davidson, B. L., and Xing, Y. (2008). Diverse splicing
patterns of exonized Alu elements in human tissues.
PLoS Genet. 4, e1000225.
Lin, C., Yang, L., Tanasa, B., Hutt, K., Ju, B. G., Ohgi, K., Zhang, J., Rose, D. W., Fu, X. D.,
Glass, C. K.,
. (2009). Nuclear receptor-induced chromosomal proximity and DNA breaks
underlie specific translocations in cancer.
et al
Cell 139, 1069-1083.
Liu, D., Bischerour, J., Siddique, A., Buisine, N., Bigot, Y., and Chalmers, R. (2007). The human
SETMAR protein preserves most of the activities of the ancestral Hsmar1 transposase.
Mol. Cell.
Biol. 27, 1125-1132.
Luan, D. D., Korman, M. H., Jakubczak, J. L., and Eickbush, T. H. (1993). Reverse transcription of
R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR
retrotransposition. Cell 72, 595-605.
Lutz, S. M., Vincent, B. J., Kazazian, H. H., Jr., Batzer, M. A., and Moran, J. V. (2003). Allelic
heterogeneity in LINE-1 retrotransposition activity. Am. J. Hum. Genet. 73, 1431-1437.
Lynch, M. (2007). The Origins of Genome Architecture. Sinauer Associates, Inc., Sunderland, MA.
Maksakova, I. A., Romanish, M. T., Gagnier, L., Dunn, C. A., van de Lagemaat, L. N., and
Mager, D. L. (2006). Retroviral elements and their hosts: Insertional mutagenesis in the mouse
germ line. PLoS Genet. 2, e2.
Martin, S. L. (1991). Ribonucleoprotein particles with LINE-1 RNA in mouse embryonal carcinoma
cells. Mol. Cell. Biol. 11, 4804-4807.
Martin, S. L., and Branciforte, D. (1993). Synchronous expression of LINE-1 RNA and protein in
mouse embryonal carcinoma cells.
Mol. Cell. Biol. 13, 5383-5392.
Martin, S. L., and Bushman, F. D. (2001). Nucleic acid chaperone activity of the ORF1 protein from
the mouse LINE-1 retrotransposon.
Mol. Cell. Biol. 21, 467-475.
Martin, S. L., Li, J., Epperson, L. E., and Lieberman, B. (1998). Functional reverse transcriptases
encoded by A-type mouse LINE-1: Defining the minimal domain by deletion analysis.
Gene 215,
69-75.
Martin, S. L., Li, J., and Weisz, J. A. (2000). Deletion analysis defines distinct functional domains for
protein-protein and nucleic acid interactions in the ORF1 protein of mouse LINE-1.
J. Mol. Biol.
304, 11-20.
Martin, S. L., Cruceanu, M., Branciforte, D., Wai-Lun, L. P., Kwok, S. C., Hodges, R. S., and
Williams, M. C. (2005). LINE-1 retrotransposition requires the nucleic acid chaperone activity of
the ORF1 protein.
J. Mol. Biol. 348, 549-561.
