Biomedical Engineering Reference
In-Depth Information
and HEALTH-F4-2007-200767/APO-SYS. JD was supported
by the European Molecular Biology Organization. We thank all
CEBI group members for helpful discussions and support.
References
1. Aebersold, R., and Mann, M. (2003) Mass
spectrometry-based
tagging (LOPIT). Mol. Cell Proteomics 3 ,
1128-1134.
10. Ong, S. E., Blagoev, B., Kratchmarova, I.,
Kristensen, D. B., Steen, H., Pandey, A., and
Mann, M. (2002) Stable isotope labeling by
amino acids in cell culture, SILAC, as a sim-
ple and accurate approach to expression pro-
teomics. Mol. Cell Proteomics 1 , 376-386.
11. Foster, L. J., de Hoog, C. L., Zhang, Y.,
Zhang, Y., Xie, X., Mootha, V. K., and Mann,
M. (2006) A mammalian organelle map
by protein correlation profiling. Cell 125 ,
187-199.
12. Yan, W., Hwang, D., and Aebersold, R.
(2008) Quantitative proteomic analysis to
profile dynamic changes in the spatial distri-
bution of cellular proteins. Methods Mol. Biol.
432 , 389-401.
13. Blagoev, B., and Mann, M. (2006) Quanti-
tative proteomics to study mitogen-activated
protein kinases. Methods 40 , 243-250.
14. Ong, S. E., and Mann, M. (2007) Stable iso-
tope labeling by amino acids in cell culture
for quantitative proteomics. Methods Mol.
Biol. 359 , 37-52.
15. Shevchenko, A., Tomas, H., Havlis, J., Olsen,
J. V., and Mann, M. (2006) In-gel diges-
tion for mass spectrometric characterization
of proteins and proteomes. Nat. Protoc. 1 ,
2856-2860.
16. Rappsilber, J., Mann, M., and Ishihama,
Y. (2007) Protocol for micro-purification,
enrichment, pre-fractionation and storage of
peptides for proteomics using StageTips.
Nat. Protoc. 2 , 1896-1906.
17. Cox, J., and Mann, M. (2008) MaxQuant
enables high peptide identification rates, indi-
vidualized p.p.b.-range mass accuracies and
proteome-wide protein quantification. Nat.
Biotechnol. 26 , 1367-1372.
proteomics. Nature
422 , 198-207.
2. Yates, J. R., 3rd, Gilchrist, A., Howell, K.
E., and Bergeron, J. J. (2005) Proteomics of
organelles and large cellular structures. Nat
Rev Mol Cell Biol 6 , 702-714.
3. Andersen, J. S., and Mann, M. (2006)
Organellar proteomics: turning inventories
into insights. EMBO Rep 7 , 874-879.
4. Yan, W., Aebersold, R., and Raines, E.
W. (2008) Evolution of organelle-associated
protein profiling. JProteomics 15 , 4-11.
5. Sadowski, P. G., Dunkley, T. P., Shadforth,
I. P., Dupree, P., Bessant, C., Griffin, J. L.,
and Lilley, K. S. (2006) Quantitative pro-
teomic approach to study subcellular local-
ization of membrane proteins. Nat. Protoc. 1 ,
1778-1789.
6. Andersen, J. S., Wilkinson, C. J., Mayor,
T., Mortensen, P., Nigg, E. A., and Mann,
M. (2003) Proteomic characterization of the
human centrosome by protein correlation
profiling. Nature 426 , 570-574.
7. Gilchrist, A., Au, C. E., Hiding, J., Bell, A.
W., Fernandez-Rodriguez, J., Lesimple, S.,
Nagaya, H., Roy, L., Gosline, S. J., Hallett,
M., Paiement, J., Kearney, R. E., Nilsson,
T., and Bergeron, J. J. (2006) Quantitative
proteomics analysis of the secretory pathway.
Cell 127 , 1265-1281.
8. Dunkley, T. P., Hester, S., Shadforth, I.
P., Runions, J., Weimar, T., Hanton, S. L.,
Griffin, J. L., Bessant, C., Brandizzi, F.,
Hawes, C., Watson, R. B., Dupree, P., and
Lilley, K. S. (2006) Mapping the Arabidop-
sis organelle proteome. Proc. Natl. Acad. Sci.
USA 103 , 6518-6523.
9. Dunkley, T. P., Watson, R., Griffin, J. L.,
Dupree, P., and Lilley, K. S. (2004) Local-
ization of organelle proteins by isotope
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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