Proteome-Wide Quantitation by SILAC - LC-MS/MS in Proteomics: Methods and Applications - page 199

Table 11.2
Comparison of selected software for SILAC quantitation

Supported
instruments

Supported
search engine

Supported operating
system Software Developed by URL & Reference

MSQuant LTQ-FT

and LTQ-
Orbitrap
(Thermo), Qstar
(Applied
Biosystems),
and Micromass
Q-Tof

Mascot (Matrix Sci-
ence, London, UK)

Microsoft Windows Center for

Experimental
Bioinformatics,
University of
Southern
Denmark,
Odense

http://www.cebi.sdu.dk
( 33 )

MaxQuant LTQ-FT and

LTQ-Orbitrap
(Thermo),

Mascot (Matrix
Science, London,
UK)

Microsoft Windows Proteomics

and Signal
transduction,
Max Planck
Institute of
Biochemistry,
Martinsried,
Germany

http://www.maxquant.org
( 22 )

Census Generic (accept

mzXML files as
input)

Sequest (Yates Lab) Generic, runs under

Java (Sun)

The Scripps
Research
Institute,
La Jolla,
CA, US

http://fields.scripps.edu/
census/index.php ( 29 )