Biomedical Engineering Reference
In-Depth Information
9. Mallick, P., Schirle, M., Chen, S. S., Flory,
M. R., Lee, H., Martin, D., Ranish, J.,
Raught B., Schmitt R., Werner T., Kuster
B., Aebersold R. (2007) Computational pre-
diction of proteotypic peptides for quan-
titative proteomics. Nat. Biotechnol. 25 (1),
125-131.
10. Walsh, G. M., Lin, S., Evans, D. M.,
Khosrovi-Eghbal, A., Beavis, R. C., and
Kast, J. J. (2009) Implementation of a data
repository-driven approach for targeted pro-
teomics experiments by multiple reaction
monitoring. Proteomics 72 (5), 838-852.
11. Desiere, F., Deutsch, E. W., Nesvizhskii, A.
I., Mallick, P., King, N. L., Eng, J. K.,
Aderem, A., Boyle R., Brunner, E., Dono-
hoe, S., Fausto, N., Hafen, E., Hood, L.,
Katze, M. G., Kennedy, K. A., Kregenow,
F., Lee, H., Lin, B., Martin, D., Ran-
ish, J. A., Rawlings, D. J., Samelson, L.
E., Shiio, Y., Watts, J. D., Wollscheid, B.,
Wright, M. E., Yan, W., Yang, L., Yi, E.
C., Zhang, H., Aebersold, R. (2005) Inte-
gration with the human genome of peptide
sequences obtained by high-throughput mass
spectrometry. Genome Biol. 6 (1), R9.
12. Kuster, B., Schirle, M., Mallick, P., and
Aebersold, R. (2005) Scoring proteomes
with proteotypic peptide probes. Nat. Rev.
Mol. Cell Biol. 6 (7), 577-583.
13. Sherwood, C. A., Eastham, A., Lee, L.
W., Risler, J., Vitek, O., and Martin, D.
B. (2009) Correlation between y-type ions
observed in ion trap and triple quadrupole
mass spectrometers. J. Proteome Res . 8 (9),
4243-4251.
14. Gerber, S. A., Rush, J., Stemman, O.,
Kirschner, M. W., and Gygi, S. P. (2003)
Absolute quantification of proteins and phos-
phoproteins from cell lysates by tandem
MS. Proc. Natl. Acad. Sci. USA 100 (12),
6940-6945.
15. Ong, S. E., Blagoev, B., Kratchmarova, I.,
Kristensen, D. B., Steen, H., Pandey, A., and
Mann, M. (2002) Stable isotope labeling by
amino acids in cell culture, SILAC, as a sim-
ple and accurate approach to expression pro-
teomics. Mol. Cell Proteomics 1 (5), 376-386.
16. Ross, P. L., Huang, Y. N., Marchese, J.
N., Williamson, B., Parker, K., Hattan, S.,
Khainovski, N., Pillai, S., Dey, S., Daniels,
S., Purkayastha, S., Juhasz, P., Martin, S.,
Bartlet-Jones, M., He, F., Jacobson, A.,
Pappin, D. J. (2004) Multiplexed pro-
tein quantification in Saccharomyces cere-
visiae using amine-reactive isobaring tag-
ging reagents. Mol. Cell Proteomics 3 (12),
1154-1169.
17. Unwin, R. D., Griffiths, J. R., and Whetton,
A. D. (2009) A sensitive mass spectromet-
ric method for hypothesis-driven detection
of peptide post-translational modifications:
multiple reaction monitoring-initiated detec-
tion and sequencing (MIDAS). Nat. Protoc.
4 (6), 870-877.
18. Unwin, R. D., Griffiths, J. R., Leverentz, M.
K., Grallert, A., Hagan, I. M., and Whet-
ton, A. D. (2005) Multiple reaction monitor-
ing to identify sites of protein phosphoryla-
tion with high sensitivity. Mol. Cell Proteomics
4 (8), 1134-1144.
19. Heftmann, E. (2004) Chromatography: fun-
damentals and applications of chromatogra-
phy and related differential migration meth-
ods - Part A: Fundamentals and techniques ,
6th ed. Elsevier Science, The Netherlands.
20. Bansal, S., and DeStefano, A. (2007) Key
elements of bioanalytical method valida-
tion for small molecules. AAPS J. 9 (1),
E109-E114.
Links
AB marketing info: MRMpilot: http://www3.
appliedbiosystems.com/cms/groups/psm_
marketing/documents/generaldocuments/
cms_047953.pdf
Multiquant: http://www3.appliedbiosystems.
com/cms/groups/psm_marketing/
documents/generaldocuments/cms_047952.
pdf
ThermoFisher tool for MRM design: http://
www.thermo.com/pinpoint
The GPM: http://www.thegpm.org
The peptide atlas: http://www.peptideatlas.org
 
 
 
 
 
 
 
 
 
 
 
Search WWH ::




Custom Search