Biomedical Engineering Reference
In-Depth Information
6.9
Online Resources
medInria
http://med.inria.fr
medInria is a multi-platform medical image processing and visualization software,
and it's free. Through an intuitive user interface, medInria offers from standard to
cutting-edge processing functionalities for your medical images such as 2D/3D/4D
image visualization, image registration, or dMRI processing and tractography.
medInria was initially developed by the Asclepios Project Team, Inria, France.
A new version of medInria is being jointly developed by the Asclepios, Athena,
Parietal and the Visages Inria Project Teams.
Key Features: Log-Euclidean metric, HARDI/ODF, Fiber Tracking.
BrainVISA/Anatomist
http://brainvisa.info/
BrainVISA/Anatomist is developed by the Institut Federatif de Recherche no.49,
France.
BrainVISA is a software, which embodies an image processing factory. A simple
control panel allows the user to trigger sequences of treatments on series of
images. These treatments are performed by calls to command lines provided by
different laboratories. These command lines, hence, are the building blocks on
which are built the assembly lines of the factory.
Anatomist is a visualization software, which main originality is a generic module
dedicated to structural data, namely sets of objects linked one another into a
graph structure. These objects may be cortical folds inferred from T1 weighted
MR data, fiber bundles inferred from MR diffusion weighted data, activated
clusters inferred from Statistical Parametric Maps, etc...This module includes
a nomenclature control panel, which can drive several brains simultaneously.
Anatomist provides also some tools to easily map Statistical Parametric Maps on
3D renderings of the brain, inflated meshes of the cortical surface, etc. ...Finally,
a manual drawing toolbox can be used for various purpose.
Key Features: toolboxes for T1-MRI, dMRI (DTI, QBI), fMRI, MEG/EEG, etc.
FMRIB Software Library (FSL)
http://www.fmrib.ox.ac.uk/fsl/index.html
FSL is a comprehensive library of analysis tools for fMRI, MRI and DTI brain
imaging data. FSL is written mainly by members of the Analysis Group, fMRIB,
Oxford, UK. FSL runs on Apple and PCs (Linux and Windows), and is very easy
to install. Most of the tools can be run both from the command line and as GUIs
(“point-and-click” graphical user interfaces).
Key Features: Diffusion toolbox contains tools for low-level diffusion parameter
reconstruction and probabilistic tractography, including crossing-fiber modelling. It
is also capable of tract-based spatial statistics—voxel-wise analysis of multi-subject
diffusion data.
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