Deconvolution and Denoising for Confocal Microscopy - Modeling in Computational Biology and Biomedicine - page 153

Volocity
http://cellularimaging.perkinelmer.com/downloads/
Volocity is designed to provide rapid, interactive, high resolution volume rendering
of 3-D and 4-D data sets. It offers a choice of rendering methods so that the best
results can be achieved from the given data set. A trial version can be downloaded
from their online site.

Code acceleration by using GPUs
http://www.accelereyes.com/
http://www.mathworks.com/products/parallel-computing/
The final in the list of commercial software is code acceleration by using GPUs.
Apart from the free version described earlier, the commercial ones are Accelereyes
and Parallel computing toolbox.

Acknowledgements Part of the results presented in this chapter was funded by the P2R Franco-
Israeli collaborative research program and the ANR DIAMOND project. The authors gratefully
acknowledge Prof. Zvi Kam (Weizmann Institute of Sciences, Israel) and Dr. Jean-Christophe
Olivo-Marin (Institut Pasteur, Paris, France) for several interesting discussions. Additionally,
our sincere gratitude goes to the editors, and Prof. James B. Pawley (Department of Zoology,
University of Wisconsin, Madison, USA) Dr. Francois Orieux (Paris Institute of Astrophysics,
France) for their detailed reviews and suggestions.

List of Acronyms

ADMM Alternating direction method of Multipliers
AU Airy units
AWGN Additive white Gaussian noise
BV Bounded variations
CCDB Cell centered database
CCD Charge coupled device
CLSM Confocal laser scanning microscope
CLT Central limit theorem
CPU Central processing unit
CUDA Compute unified device architecture
DAPI 4',6-diamidino-2-phenylindole
DHPR Dihydropyridine
DFT Discrete Fourier transform
DOF Depth-of-field
EM Expectation-maximization
FFT Fast Fourier transform
FT Fourier transform
FWHM Full-width at half maximum
GN

Gaussian noise

GFP Green Fluorescent Protein