Biology Reference
In-Depth Information
58. Brudno M, Morgenstern B. (2002) Fast and sensitive alignment of large
genomic sequences. Proc IEEE Comput Soc Bioinform Conf 1 : 138-47.
59. Delcher AL, Kasif S, Fleischmann RD et al . (1999) Alignment of whole
genomes. Nucleic Acids Res 27 (11): 2369-76.
60. Schwartz S, Kent WJ, Smit A et al . (2003) Human-mouse alignments with
BLASTZ. Genome Res 13 (1): 103-7.
61. Sinha AU, Meller J. (2007) Cinteny: flexible analysis and visualization of
synteny and genome rearrangements in multiple organisms. BMC Bioinformatics
8 : 82.
62. Brudno M, Do CB, Cooper GM et al . (2003) LAGAN and Multi-LAGAN:
efficient tools for large-scale multiple alignment of genomic DNA. Genome Res
13 (4): 721-31.
63. Wang J, Keightley PD, Johnson T. (2006) MCALIGN2: faster, accurate global
pairwise alignment of non-coding DNA sequences based on explicit models of
indel evolution. BMC Bioinformatics 7 : 292.
64. Scannell DR, Byrne KP, Gordon JL et al . (2006) Multiple rounds of speciation
associated with reciprocal gene loss in polyploid yeasts. Nature 440 (7082):
341-5.
65. Aury JM, Jaillon O, Duret L et al . (2006) Global trends of whole-genome dupli-
cations revealed by the ciliate Paramecium tetraurelia . Nature 444 (7116):
171-8.
66. Vastenhouw NL, Plasterk RH. (2004) RNAi protects the Caenorhabditis
elegans germline against transposition. Trends Genet 20 (7): 314-9.
67. Bestor TH. (2003) Cytosine methylation mediates sexual conflict. Trends Genet
19 (4): 185-90.
68. Lynch M. (2007) The Origins of Genome Architecture . Sunderland, MA: Sinauer
Associates.
69. Zdobnov EM, Campillos M, Harrington ED et al . (2005) Protein coding
potential of retroviruses and other transposable elements in vertebrate genomes.
Nucleic Acids Res 33 (3): 946-54.
70. Dooner HK, Weil CF. (2007) Give-and-take: interactions between DNA trans-
posons and their host plant genomes. Curr Opin Genet Dev 17 (6): 486-92.
71. Kazazian Jr HH. (2004) Mobile elements: drivers of genome evolution. Science
303 (5664): 1626-32.
72. Christley S, Lobo NF, Madey G. (2008) Multiple organism algorithm for find-
ing ultraconserved elements. BMC Bioinformatics 9 : 15.
73. Lowe TM, Eddy SR. (1997) tRNAscan-SE: a program for improved detection
of transfer RNA genes in genomic sequence. Nucleic Acids Res 25 (5): 955-64.
74. Eddy SR. (2006) Computational analysis of RNAs. Cold Spring Harb Symp
Quant Biol 71 : 117-28.
75. Ambros V. (2004) The functions of animal microRNAs. Nature 431 (7006):
350-5.
Search WWH ::




Custom Search