Biology Reference
In-Depth Information
23.
Slepchenko BM, Schaff JC, Carson JH, Loew LM. (2002) Computational cell
biology: spatiotemporal simulation of cellular events.
Annu Rev Biophys Biomol
Struct
31
: 423-41.
24.
Fall CP, Marland ES, Wagner JM, Tyson JJ. (2002)
Computational Cell Biology
.
Interdisciplinary Applied Mathematics, Vol. 20. New York, NY: Springer.
25.
Strogatz SH. (2000)
Nonlinear Dynamics and Chaos
. Boulder, CO: Westview
Press.
26.
Takahashi K, Yugi K, Hashimoto K,
et al
. (2002) Computational challenges in
cell simulation: a software engineering approach.
IEEE Intell Syst
17
: 64-71.
27.
Koumoutsakos P. (2005) Multiscale flow simulations using particles.
Annu
Rev Fluid Mech
37
: 457-87.
28.
Mielke A. (2006)
Analysis, Modeling and Simulation of Multiscale Problems
.
Heidelberg, Germany: Springer.
29.
Alt W, Chaplain M, Griebel M, Lenz J. (2008)
Polymer and Cell Dynamics
:
Multiscale Modeling and Numerical Simulations
. Basel, Switerland: Birkhäuser.
30.
Kovalenko A, Gusarov S, Stepanova M. (2009)
Multiscale Modeling: Concepts
,
Theories, and Applications
. Boca Raton, Florida: CRC Press.
31.
Chauviere A, Preziosi L, Verdier C. (2009)
Cell Mechanics: From Single Scale-
based Models to Multiscale Modeling
. Boca Raton, Florida: Chapman & Hall.
32.
Sbalzarini IF, Walther JH, Bergdorf M,
et al
. (2006) PPM — a highly efficient
parallel particle-mesh library for the simulation of continuum systems.
J Comput Phys
215
: 566-88.
33.
Reynwar BJ, Gregoria I, Harmandaris VA,
et al
. (2007) Aggregation and vesic-
ulation of membrane proteins by curvaturemediated interactions.
Nature
447
: 461-4.
34.
Periole X, Huber T, Marrink SJ, Sakmar TP. (2007) G protein-coupled recep-
tors self-assemble in dynamics simulations of model bilayers.
J Am Chem Soc
129
: 10126-32.
35.
Chu JW, Voth GA. (2006) Coarse-grained modeling of the actin filament
derived from atomistic-scale simulations.
Biophys J
90
: 1572-82.
36.
Kashiwagi A, Urabe I, Kaneko K, Yomo T. (2006) Adaptive response of a gene
network to environmental changes by fitness-induced attractor selection.
PLoS
ONE
1
: e49.
37.
Burlando B. (1993) The fractal geometry of evolution.
J Theor Biol
163
: 161-72.
38.
Newman TJ, Antonovics J, Wilbur HM. (2002) Population dynamics with a
refuge: fractal basins and the suppression of chaos.
Theor Popul Biol
62
: 121-8.
39.
Grasman J, Brascamp JW, Van Leeuwen JL, Van Putten B. (2003) The multi-
fractal structure of arterial trees.
J Theor Biol
220
: 75-82.
40.
Smith TG Jr, Marks WB, Lang GD,
et al
. (1989) A fractal analysis of cell
images.
J Neurosci Methods
27
: 173-80.