Biology Reference
In-Depth Information
28. Nakatani Y, Takeda H, Kohara Y, Morishita S. (2007) Reconstruction of the verte-
brate ancestral genome reveals dynamic genome reorganization in early vertebrates .
Genome Res 17 : 1254-65.
29. Putnam NH, Hellsten U, Yu JS et al . (2008) The amphioxus genome and the
evolution of the chordate karyotype. Nature 453 : 1064-71.
30. Otto SP, Whitton J. (2000) Polyploid incidence and evolution . Annu Rev Genet
34 : 401-37.
31. Altschul SF, Madden TL, Schaffer AA et al . (1997) Gapped BLAST and PSI-
BLAST: a new generation of protein database search programs . Nucleic Acids
Res 25 : 3389-402.
32. Amoutzias GD, Veron A, Weiner AJ et al . (2007) One billion years of bZIP tran-
scription factor evolution: conservation and change in dimerization, and DNA-
binding site specificity . Mol Biol Evol 24 : 827-835.
33. Escriva Garcia H, Laudet V, Robinson-Rechavi M. (2003) Nuclear receptors are
markers of animal genome evolution . J Struct Funct Genomics 3 : 177-84.
34. Robinson-Rechavi M, Laudet V. (2003) Bioinformatics of nuclear receptors.
In: Russell DW, Mangelsdorf DJ (eds.). Methods in Enzymology . New York, NY:
Academic Press, pp. 93-118.
35. Fitch WM. (2000) Homology: a personal view on some of the problems . Trends
Genet 16 : 227-31.
36. Guindon S, Gascuel O. (2003) A simple, fast, and accurate algorithm to estimate
large phylogenies by maximum likelihood . Syst Biol 52 : 696-704.
37. Li H, Coghlan A, Ruan J et al . (2006) TreeFam: a curated database of phyloge-
netic trees of animal gene families . Nucleic Acids Res 34 : D572-80.
38. Duret L, Mouchiroud D, Gouy M. (1994) HOVERGEN: a database of homol-
ogous vertebrate genes . Nucleic Acids Res 22 : 2360-5.
39. Perrière G, Combet C, Penel S et al . (2003) Integrated databanks access
and sequence/structure analysis services at the PBIL .
Nucleic Acids Res
31 : 3393-9.
40. Perriere G, Duret L, Gouy M. (2000) HOBACGEN: database system for com-
parative genomics in bacteria . Genome Res 10 : 379-85.
41. Dufayard JF, Duret L, Penel S et al . (2005) Tree pattern matching in phylogenetic
trees: automatic search for orthologs or paralogs in homologous gene sequence
databases . Bioinformatics 21 : 2596-603.
42. Laudet V, Gronemeyer H. (2002) The nuclear receptors factsbook . London, UK:
Academic Press.
43. Escriva H, Delaunay F, Laudet V. (2000) Ligand binding and nuclear receptor
evolution . Bioessays 22 : 717-27.
44. Bertrand S, Brunet FG, Escriva H et al . (2004) Evolutionary genomics of
nuclear receptors: from twenty-five ancestral genes to derived endocrine systems .
Mol Biol Evol 21 : 1923-37.
Search WWH ::




Custom Search