Biology Reference
In-Depth Information
39. Almaas E, Kovács B, Vicsek T
et al
. (2004) Global organization of metabolic
fluxes in the bacterium
Escherichia coli
.
Nature
427
(6977): 839-43.
40. Jeong H, Mason SP, Barabási AL, Oltvai ZN. (2001) Lethality and centrality in
protein networks.
Nature
411
(6833): 41-2.
41. Jeong H, Tombor B, Albert R
et al
. (2000) The large-scale organization of
metabolic networks.
Nature
407
(6804): 651-4.
42. Ravasz E, Somera AL, Mongru DA
et al
. (2002) Hierarchical organization of
modularity in metabolic networks.
Science
297
(5586): 1551-5.
43. Milgram S. (1967) The small world problem.
Psychol Today
1
: 61-67.
44. Keller EF. (2005) Revisiting “scale-free” networks.
Bioessays
27
(10): 1060-8.
45. Norris V, Raine D. (2006) On the utility of scale-free networks.
Bioessays
28
(5):
563-4.
46. Eisenberg E, Levanon EY. (2003) Preferential attachment in the protein
network evolution.
Phys Rev Lett
91
(13): 138701.
47. Jansen R, Yu H, Greenbaum D
et al
. (2003) A Bayesian networks approach for
predicting protein-protein interactions from genomic data.
Science
302
(5644):
449-53.
48. Lee I, Date SV, Adai AT, Marcotte EM. (2004) A probabilistic functional
network of yeast genes.
Science
306
(5701): 1555-8.
49. Yu H, Luscombe NM, Lu HX
et al
. (2004) Annotation transfer between
genomes: protein-protein interologs and protein-DNA regulogs.
Genome Res
14
(6): 1107-18.
50. Kerrien S, Alam-Farugue Y, Aranda B
et al
. (2007) IntAct — open source
resource for molecular interaction data.
Nucleic Acids Res
35
(Database issue):
D561-5.
51. Salwinski L, Miller CS, Smith AJ
et al
. (2004) The database of interacting
Proteins: 2004 update.
Nucleic Acids Res
32
(Database issue): D449-51.
52. Breitkreutz BJ, Stark C, Reguly T
et al
. (2008) The BioGRID interaction data-
base: 2008 update.
Nucleic Acids Res
36
(Database issue): D637-40.
53. Mishra GR, Suresh M, Kumaran K
et al
. (2006) Human Protein Reference
Database — 2006 update.
Nucleic Acids Res
34
(Database issue): D411-4.
54. Chatr-aryamontri A, Ceol A, Montecchi Palazzi L
et al
. (2007) MINT: the
Molecular INTeraction database.
Nucleic Acids Res
35
(Database issue):
D572-4.
55. Kanehisa M, Araki M, Goto S
et al
. (2008) KEGG for linking genomes to life
and the environment.
Nucleic Acids Res
36
(Database issue): D480-4.
56. Vastrik I, D'Eustachio P, Schmidt E
et al
. (2007) Reactome: a knowledge base
of biologic pathways and processes.
Genome Biol
8
(3): R39.
57. von Mering C, Jensen LJ, Kuhn M
et al
. (2007) STRING 7 — recent develop-
ments in the integration and prediction of protein interactions.
Nucleic Acids Res
35
(Database issue): D358-62.
