Biology Reference
In-Depth Information
97.
Hofacker I, Stadler P. (1999) Automatic detection of conserved base pairing
patterns in RNA virus genomes.
Comput Chem
23
: 401-14.
98.
Lim L, Lau N, Weinstein E
et al
. (2003) The microRNAs of
Caenorhabditis
elegans
.
Genes Dev
17
: 991-1008.
99.
Nam J, Shin K, Han J
et al
. (2005) Human microRNA prediction through a
probabilistic co-learning model of sequence and structure.
Nucleic Acids Res
33
: 3570-81.
100.
Hofacker I. (2003) Vienna RNA secondary structure server.
Nucleic Acids Res
31
: 3429-31.
101.
Xie X, Lu J, Kulbokas E
et al
. (2005) Systematic discovery of regulatory motifs
in human promoters and 3′ UTRs by comparison of several mammals.
Nature
434
: 338-45.
102.
Doench J, Sharp P. (2004) Specificity of microRNA target selection in transla-
tional repression.
Genes Dev
18
: 504-11.
103.
Brennecke J, Stark A, Russell R, Cohen S. (2005) Principles of microRNA-
target recognition.
PLoS Biol
3
: e85.
104.
Lewis B, Burge C, Bartel D. (2005) Conserved seed pairing, often fianked by
adenosines, indicates that thousands of human genes are microRNA targets.
Cell
120
: 15-20.
105.
Xue C, Li F, He T
et al
. (2005) Classification of real and pseudo microRNA
precursors using local structure-sequence features and support vector machine.
BMC Bioinformatics
6
: 310.
106.
Hertel J, Stadler P. (2006) Hairpins in a haystack: recognizing microRNA
precursors in comparative genomics data.
Bioinformatics
22
: e197-202.
107.
Helvik S, Snove O, Saetrom P. (2007) Reliable prediction of Drosha
processing sites improves microRNA gene prediction.
Bioinformatics
23
:
142-9.
108.
Rajewsky N, Socci N. (2004) Computational identification of microRNA
targets.
Dev Biol
267
: 529-35.
109.
Lai E. (2002) Micro RNAs are complementary to 3′ UTR sequence motifs that
mediate negative post-transcriptional regulation.
Nat Genet
30
: 363-4.
110.
Lewis B, Shih I, Jones-Rhoades M
et al
. (2003) Prediction of mammalian
microRNA targets.
Cell
115
: 787-98.
111.
Didiano D, Hobert O. (2006) Perfect seed pairing is not a generally reliable
predictor for miRNA-target interactions.
Nat Struct Mol Biol
13
: 849-51.
112.
Gaidatzis D, van Nimwegen E, Hausser J, Zavolan M. (2007) Inference of
miRNA targets using evolutionary conservation and pathway analysis.
BMC
Bioinformatics
8
: 69.
113.
Stark A, Brennecke J, Russell R, Cohen S. (2003) Identification of
Drosophila
microRNA targets.
PLoS Biol
1
: e60.
114.
Long D, Lee R, Williams P
et al
. (2007) Potent effect of target structure on
microRNA function.
Nat Struct Mol Biol
14
: 287-94.
